View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3862_low_1 (Length: 762)
Name: NF3862_low_1
Description: NF3862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3862_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 541; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 70 - 744
Target Start/End: Original strand, 32066811 - 32067489
Alignment:
| Q |
70 |
atatgtagattttaccgagaactctcctccctcctccggttttcaccccatgaatcttccaccaccctccctctaaacccatttatagtggcctaaaggc |
169 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32066811 |
atatgtagattttaccgagaactctcctccctcctccggttttcaccccacgaatcttccaccaccctccctctaaacccatttatagtggccaaaaggt |
32066910 |
T |
|
| Q |
170 |
tatcaatttgctccccctcccacacaaacggtaatcttctccaaagagtagtctctacgcaccccctcccaatcaatggtatgtaatcattatattttat |
269 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32066911 |
tttcaatttgctccccctcccacacaaacggtaatcttctccaaagagt---ctcgacacaccccctcccaatcaatggtatgtaatcattatattttat |
32067007 |
T |
|
| Q |
270 |
gttctctatttaatctcttcaaaatagtaaagtttaatatagaatttaaagttgatttggagggccttgaaatgttgtcacatttattttatttttacac |
369 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32067008 |
gttctctatttaatcttttcaaaatagtaaagtttaatatagaatttaaagttgatttggagggccttgaaatgttgtcacatttattttatttttacaa |
32067107 |
T |
|
| Q |
370 |
gattgtgtgaggatcaattcgatagtgcgtaatagagcttaaaatgtattattaatagacagatcaggtgcacaatcaaatgcataaaataaat------ |
463 |
Q |
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|||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||| || |
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| T |
32067108 |
tattgtgtggggatcaattcgagagtgcgtaatagagcttaaaatgtattattaat----agataaggtacacaatcaaatgcataaaatacatcttcca |
32067203 |
T |
|
| Q |
464 |
-----acaaattaaacatagttactcaacgtagaaaaaacaatttatagagaataattactatatcataattctgcaagtctaagcaagaatctcattca |
558 |
Q |
| |
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|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32067204 |
aaaggacaaattaaacatagttactcaccgtaggaaaaacaatttatagagaataattactatatcataattctgcaagtctaagcaagaatctcattca |
32067303 |
T |
|
| Q |
559 |
atggtttgggctcaagttttgccttctctaggttcctaagttctttttcttccttaccaagcttcttcatcctagcaatctcaaggtccttgctcatctt |
658 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32067304 |
atggtttgggctcaagttttgccttctctaggttcctaagttctttttcttccttaccaagcttcttcatcctagcaatctcaaggtccttgctcatctt |
32067403 |
T |
|
| Q |
659 |
cctcctatacatttctgcaaaagtaattggttcatccatcacagatttctctccatctctaatcttcaaagggtacacagttgcat |
744 |
Q |
| |
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||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32067404 |
cctcctatacatttcagcaaaagtgattggttcttccatcacagatttctctccatctctaatcttcaaagggtacacagttgcat |
32067489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 535 - 744
Target Start/End: Original strand, 32090295 - 32090504
Alignment:
| Q |
535 |
aagtctaagcaagaatctcattcaatggtttgggctcaagttttgccttctctaggttcctaagttctttttcttccttaccaagcttcttcatcctagc |
634 |
Q |
| |
|
|||| |||||||||||||||||||| || |||| |||| |||||||||||||| || |||||||||||||||||||||| | ||||||||||||||||| |
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|
| T |
32090295 |
aagtttaagcaagaatctcattcaaaggcttggcttcaatttttgccttctctaagtccctaagttctttttcttccttagccagcttcttcatcctagc |
32090394 |
T |
|
| Q |
635 |
aatctcaaggtccttgctcatcttcctcctatacatttctgcaaaagtaattggttcatccatcacagatttctctccatctctaatcttcaaagggtac |
734 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32090395 |
aatctcaaggtccttgctcatcttcctcctatacatttcagcaaaagtgattggttcttccatcacagatttctctccatctctaatcttcaaagggtac |
32090494 |
T |
|
| Q |
735 |
acagttgcat |
744 |
Q |
| |
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|||||||||| |
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|
| T |
32090495 |
acagttgcat |
32090504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 37987303 - 37987348
Alignment:
| Q |
11 |
catcatcacccccaccacacaaaccaacaccacggtttaccagaca |
56 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| | |||||| |
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|
| T |
37987303 |
catcatctcccccaccacacaaaccaacaccacggttcagcagaca |
37987348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 1e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 575 - 744
Target Start/End: Original strand, 23307341 - 23307510
Alignment:
| Q |
575 |
ttttgccttctctaggttcctaagttctttttcttccttaccaagcttcttcatcctagcaatctcaaggtccttgctcatcttcctcctatacatttct |
674 |
Q |
| |
|
||||||||||| | || |||||||||||| ||||| ||||| | |||||||||||||||| |||||||||| |||||||| |||||||| | ||||| |
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|
| T |
23307341 |
ttttgccttctgcatgtccctaagttctttatcttctttacccatcttcttcatcctagcagtctcaaggtcattgctcatattcctcctgaatatttca |
23307440 |
T |
|
| Q |
675 |
gcaaaagtaattggttcatccatcacagatttctctccatctctaatcttcaaagggtacacagttgcat |
744 |
Q |
| |
|
|||||||| | ||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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|
| T |
23307441 |
gcaaaagtgagaggttcctccatcacagatttctctccctctctaaccttcaaagggtacacagttgcat |
23307510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 697999 - 697953
Alignment:
| Q |
10 |
acatcatcacccccaccacacaaaccaacaccacggtttaccagaca |
56 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||||| |
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|
| T |
697999 |
acatcatcacccccaccacactaaccaacaccacggtttagcagaca |
697953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 651 - 744
Target Start/End: Complemental strand, 8625261 - 8625168
Alignment:
| Q |
651 |
ctcatcttcctcctatacatttctgcaaaagtaattggttcatccatcacagatttctctccatctctaatcttcaaagggtacacagttgcat |
744 |
Q |
| |
|
||||||||||| |||||||| |||||||| || |||||||| || | || || |||||||| ||||||||||| | ||| ||||||||||||| |
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| T |
8625261 |
ctcatcttccttctatacatctctgcaaatgtgattggttcttctagcaatgacttctctccttctctaatcttgagaggatacacagttgcat |
8625168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 10243825 - 10243788
Alignment:
| Q |
10 |
acatcatcacccccaccacacaaaccaacaccacggtt |
47 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
10243825 |
acatcatcacccccaccacacaaaccaacaccacggtt |
10243788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 46693262 - 46693294
Alignment:
| Q |
10 |
acatcatcacccccaccacacaaaccaacacca |
42 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
46693262 |
acatcatcacccccaccacacaaaccaacacca |
46693294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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