View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3862_low_3 (Length: 257)
Name: NF3862_low_3
Description: NF3862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3862_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 25 - 186
Target Start/End: Original strand, 8043956 - 8044117
Alignment:
| Q |
25 |
tcaggatggtatacctcgcatgcggccaaccataaagaacaccaaattgagacacaaaagaacatcaatgtctgtttaaatactatatgttaaataaata |
124 |
Q |
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| T |
8043956 |
tcaggattgtctacctcgcacggggccaaccataaagaacaccaaattgagacacaaaagaacatcaatgtttgtttaaatattatatgttaaataaata |
8044055 |
T |
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| Q |
125 |
gagggtatgccaaaataagttgctcgtgtgttcgcaagtgtcttttgttttatgtatttgtg |
186 |
Q |
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| T |
8044056 |
gagggtataccaaaataagttgctcgtgtgttcgcaagtgtcttttgttttacgtatttgtg |
8044117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 36 - 126
Target Start/End: Original strand, 8043615 - 8043704
Alignment:
| Q |
36 |
tacctcgcatgcggccaaccataaagaacaccaaattgagacacaaaagaacatcaatgtctgtttaaatactatatgttaaataaataga |
126 |
Q |
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| T |
8043615 |
tacctcacatggggccaaccataaaaaacaccaaattgagacacaaaa-aaaattaatgtttgtttaaatattatatgttaaataattaga |
8043704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 132
Target Start/End: Original strand, 8050346 - 8050439
Alignment:
| Q |
36 |
tacctcgcatgcggccaaccataaagaacaccaaattgagacacaaaagaacatcaatgtctgtttaaatactatatgttaaataaatagagggtat |
132 |
Q |
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| T |
8050346 |
tacctcgcatggggccatccataaagaacatcaaattgagacac--aagaacatcaatgtttgttt-aatattatatgttaaataatcagagggtat |
8050439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 8020703 - 8020760
Alignment:
| Q |
36 |
tacctcgcatgcggccaaccataaagaacaccaaattgagacacaaaagaacatcaat |
93 |
Q |
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| T |
8020703 |
tacctcgcatggggccgtccataaagaacaacaatttgagacacaaaagaacatcaat |
8020760 |
T |
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