View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3862_low_4 (Length: 238)

Name: NF3862_low_4
Description: NF3862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3862_low_4
NF3862_low_4
[»] chr8 (8 HSPs)
chr8 (112-238)||(8044597-8044723)
chr8 (109-238)||(8050899-8051028)
chr8 (41-238)||(8021404-8021606)
chr8 (129-219)||(8035493-8035583)
chr8 (22-212)||(8035584-8035778)
chr8 (110-231)||(7992712-7992833)
chr8 (183-238)||(8007755-8007810)
chr8 (184-237)||(1171069-1171124)
[»] chr4 (1 HSPs)
chr4 (179-238)||(46144924-46144985)
[»] chr5 (1 HSPs)
chr5 (179-238)||(27023193-27023252)
[»] chr3 (1 HSPs)
chr3 (200-238)||(20002027-20002065)
[»] chr7 (1 HSPs)
chr7 (179-237)||(45960521-45960581)
[»] chr2 (1 HSPs)
chr2 (179-232)||(11319180-11319235)


Alignment Details
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 112 - 238
Target Start/End: Complemental strand, 8044723 - 8044597
Alignment:
Q  112 atcatttttcaaagagaatcattttagaaatctgtcgaaatttgacgaatgcacgctttgttaaaagtttgaatattagataaatcatacaattgatttt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  8044723 atcatttttcaaagagaatcattttagaaatctgtcgaaatttgacgaatgcatgctttgttaaaagtttgaatattagataaatcacacaattgatttt 8044624  T
Q  212 ctctcatgctcaagaattaaaaatgac 238  Q
    ||||| |||||||||||||||||||||    
T  8044623 ctctcttgctcaagaattaaaaatgac 8044597  T

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Target: chr8; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 109 - 238
Target Start/End: Complemental strand, 8051028 - 8050899
Alignment:
Q  109 agaatcatttttcaaagagaatcattttagaaatctgtcgaaatttgacgaatgcacgctttgttaaaagtttgaatattagataaatcatacaattgat 208  Q
    ||||||||||||||||||||||||||||||||||||  | |||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||    
T  8051028 agaatcatttttcaaagagaatcattttagaaatctaccaaaatttgacgaatgcatgctttgttaaaagtttgaatattagataaaccacacaattgat 8050929  T
Q  209 tttctctcatgctcaagaattaaaaatgac 238  Q
    ||||||||||||||| ||||||||||||||    
T  8050928 tttctctcatgctcatgaattaaaaatgac 8050899  T

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Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 41 - 238
Target Start/End: Complemental strand, 8021606 - 8021404
Alignment:
Q  41 gtcgatcatgaggttttttgtgccatgggtcgtgcaattttttaactaatattgcaagttgatatacaa-------gaatcatttttcaaagagaatcat 133  Q
    |||||||||| | ||||||||| |||| | ||||||||||||||| ||||||||  |||||||||||||       ||||||||||||||||||||||||    
T  8021606 gtcgatcatgcgattttttgtggcatgtgccgtgcaattttttaattaatattgtgagttgatatacaacttgtttgaatcatttttcaaagagaatcat 8021507  T
Q  134 tttagaaatctgtcgaaatttgacgaatgcacgctttgttaaaagtttgaatattagataaatcatacaattgattttctctcatgctcaagaattaaaa 233  Q
    ||||||| ||    ||||||||| ||||||| |||||||||||| ||||||||||| ||||||  | ||||| ||||||||||||||||| |||||||||    
T  8021506 tttagaagtcccctgaaatttgatgaatgcatgctttgttaaaaatttgaatattaaataaat--tgcaattaattttctctcatgctcatgaattaaaa 8021409  T
Q  234 atgac 238  Q
    |||||    
T  8021408 atgac 8021404  T

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Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 129 - 219
Target Start/End: Complemental strand, 8035583 - 8035493
Alignment:
Q  129 atcattttagaaatctgtcgaaatttgacgaatgcacgctttgttaaaagtttgaatattagataaatcatacaattgattttctctcatg 219  Q
    ||||||||| |||||||||||||||||||||||||  ||||||||||||  |||||||| |||||||||| ||||||||||||||| ||||    
T  8035583 atcattttaaaaatctgtcgaaatttgacgaatgcgtgctttgttaaaaaattgaatatcagataaatcacacaattgattttctcgcatg 8035493  T

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Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 212
Target Start/End: Complemental strand, 8035778 - 8035584
Alignment:
Q  22 ataggttacccttaagatcgtcgatcatgaggttttttgtgccatgggtcgtgcaattttttaactaatattgcaagttgatatacaa-------gaatc 114  Q
    ||||| ||||||||||   ||||||||||   ||||||||| |||||| ||||||| | ||||| ||||||||  |||| ||||||||       |||||    
T  8035778 ataggctacccttaag---gtcgatcatgcaattttttgtggcatgggccgtgcaactatttaattaatattgtgagttaatatacaacttgcttgaatc 8035682  T
Q  115 atttttcaaagagaatcattttagaaatctgtcgaaatttgacgaatgcacgctttgttaaaagtttgaatattagataaatcatacaattgattttc 212  Q
    |||||| |||||||||||||||| ||||||    |||||||||||||||  ||||||||||||  |||||||| |||||||||| | |||||||||||    
T  8035681 attttttaaagagaatcattttaaaaatctacataaatttgacgaatgcgtgctttgttaaaaaattgaatatcagataaatcacataattgattttc 8035584  T

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Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 110 - 231
Target Start/End: Complemental strand, 7992833 - 7992712
Alignment:
Q  110 gaatcatttttcaaagagaatcattttagaaatctgtcgaaatttgacgaatgcacgctttgttaaaagtttgaatattagataaatcatacaattgatt 209  Q
    ||||||||||  |||||||||||||||||||||||  ||||  |||| || | || |||||| ||||| |||||||||||||||||||| ||||||||||    
T  7992833 gaatcattttataaagagaatcattttagaaatctaccgaacattgatgactacatgctttgataaaaatttgaatattagataaatcacacaattgatt 7992734  T
Q  210 ttctctcatgctcaagaattaa 231  Q
    ||||| ||| | || |||||||    
T  7992733 ttctcccattcgcatgaattaa 7992712  T

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Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 183 - 238
Target Start/End: Complemental strand, 8007810 - 8007755
Alignment:
Q  183 aatattagataaatcatacaattgattttctctcatgctcaagaattaaaaatgac 238  Q
    ||||| |||||||||| |||||||||||||||||||||||| |||||||| |||||    
T  8007810 aatatgagataaatcacacaattgattttctctcatgctcatgaattaaacatgac 8007755  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 237
Target Start/End: Complemental strand, 1171124 - 1171069
Alignment:
Q  184 atattagataaatcataca--attgattttctctcatgctcaagaattaaaaatga 237  Q
    |||| |||||||||| |||  |||||||||||||||| ||||||||||||| ||||    
T  1171124 atataagataaatcaaacataattgattttctctcattctcaagaattaaacatga 1171069  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 46144985 - 46144924
Alignment:
Q  179 tttgaatattagataaatcataca--attgattttctctcatgctcaagaattaaaaatgac 238  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||| ||| |||| |||||    
T  46144985 tttgaatattagataaatcatacacaattgattttctctcatgctcacgaactaaacatgac 46144924  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 27023252 - 27023193
Alignment:
Q  179 tttgaatattagataaatcatacaattgattttctctcatgctcaagaattaaaaatgac 238  Q
    |||||||||||||||||||| |||||||||||||||||| | ||| ||| |||| |||||    
T  27023252 tttgaatattagataaatcacacaattgattttctctcaagttcatgaactaaacatgac 27023193  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 20002027 - 20002065
Alignment:
Q  200 acaattgattttctctcatgctcaagaattaaaaatgac 238  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  20002027 acaattgattttctctcatgctcatgaattaaacatgac 20002065  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 45960581 - 45960521
Alignment:
Q  179 tttgaatattagataaatcat--acaattgattttctctcatgctcaagaattaaaaatga 237  Q
    |||||||||||||||||||||  ||||||| |||||||||||  ||| |||||||| ||||    
T  45960581 tttgaatattagataaatcataaacaattggttttctctcattttcatgaattaaatatga 45960521  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 11319180 - 11319235
Alignment:
Q  179 tttgaatattagataaatcat--acaattgattttctctcatgctcaagaattaaa 232  Q
    ||||||| |||||||||||||  |||||||| |||||||||| |||| ||||||||    
T  11319180 tttgaatgttagataaatcatacacaattgaatttctctcattctcatgaattaaa 11319235  T

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