View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3862_low_6 (Length: 237)
Name: NF3862_low_6
Description: NF3862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3862_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 45062753 - 45062542
Alignment:
| Q |
1 |
ctatattagcaggccctgtagaaatcttatttttaggattctcatag-cacatcaatgctccaagaacagttgagtaaaaatatcatgtccaattactaa |
99 |
Q |
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| T |
45062753 |
ctatattagcaggcccagcagtaatcttatttttaggattctcataggcacatcaatgctccaagaacagttgagtaaaaatatcatgtccaattactaa |
45062654 |
T |
|
| Q |
100 |
cactaatgttaaaaatgaaaaagaactaagaatattcttgcatgttactaagcttctatgaatctatctctttctcaaacatcatccaaggtagacacaa |
199 |
Q |
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| T |
45062653 |
cagtagtgtcaaaaatgaaaaagaac------------tgcatgttactaagcttctatgaatctatatctttctcaaacatcattcaaggtagacacaa |
45062566 |
T |
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| Q |
200 |
ttggtcggtgtgtattgtgtgtga |
223 |
Q |
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|||||||||||||||||| ||||| |
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| T |
45062565 |
ttggtcggtgtgtattgtttgtga |
45062542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 209
Target Start/End: Original strand, 48491400 - 48491607
Alignment:
| Q |
5 |
attagcaggccctgtagaaatcttatttttaggattctcatagcacatcaatgctccaagaacagttgagtaaaaatatcatgtccaattactaacacta |
104 |
Q |
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|||||||||| ||| || ||| |||||||||||||||||||||||||||||| |||||| | |||||||||| ||| ||| |||| ||||| || || | |
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| T |
48491400 |
attagcaggcactgcagtaattttatttttaggattctcatagcacatcaatcctccaacagcagttgagtagaaacatcctgtcgaatta--aagacca |
48491497 |
T |
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| Q |
105 |
a---tgttaaaaatgaaaaagaactaagaatattcttg--catgttactaagcttctatgaatctatctctttctcaaacatcatccaaggtagacacaa |
199 |
Q |
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| T |
48491498 |
acagtgtcaaaaatgaaacagagctgagaatatccttgtactaaatactaaacttctatgaatccaaccctttctcaaacatcatccaaggtagacacaa |
48491597 |
T |
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| Q |
200 |
ttggtcggtg |
209 |
Q |
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||||| |||| |
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| T |
48491598 |
ttggttggtg |
48491607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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