View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3863_high_12 (Length: 483)
Name: NF3863_high_12
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3863_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 375; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Complemental strand, 28418380 - 28417908
Alignment:
| Q |
1 |
tggatcaatatgttttaccttggtcataaatnnnnnnnttctaagcaaaacaaaagagataacttgtaaaaggagtcaagagcatgatacaaatcaacac |
100 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28418380 |
tggatcaatatgttttaccttggtcataaataaaaaaattctaagcaaaacaaaagagataacttgtaaaagaagtcaagagcatgatacaaatcaacac |
28418281 |
T |
|
| Q |
101 |
actcttatttacagtttcatatnnnnnnngtaaatgtgtacaagagatcaagaacatgctactatccaaagcaacactctaaaagacaatgatattcttt |
200 |
Q |
| |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28418280 |
actcttatttacagtttcatataaaaaaagtcaatgtgtacaagagatcaagaacatgctactatccaaagcaacactctaaaagacaatgatattcttt |
28418181 |
T |
|
| Q |
201 |
tgtttttcacagtcgttaaaacattcttcctaaacctcaccaacaatttatttatctttcagaatatttgaatcatatataaaagcttttgacagtggat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
28418180 |
tgtttttcacagtcgttaaaacattcttcctaaacctcaccaacaatttatttatctttcagaatctttgaatc----ataaaagcttttgacagtggag |
28418085 |
T |
|
| Q |
301 |
gaaatggtagaaggatcagccatttctctc--attagtttgcatgtgttgaacaggtgggatgagagtaacaccaagctcttcaatgctcatggagttct |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
28418084 |
gaaatggtagaaggatcagccatttctctcatattagtttgcatgtgttgaacaggtgggataagagtaacaccaagctcttcaatgctcatgaagttct |
28417985 |
T |
|
| Q |
399 |
gttctgtgaaagggtttctccacatacaaccatccattgatggtgcaacaaacatcggcttctcgtagtcctatgct |
475 |
Q |
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| T |
28417984 |
gttctgtgaaagggtttctccacatacaaccatccattgatggtgcaacgaacatcggcttctcgtagtcccatgct |
28417908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 39 - 475
Target Start/End: Original strand, 28584874 - 28585326
Alignment:
| Q |
39 |
ttctaagcaaaacaaaagagataacttgtaaaaggagtcaagagcatgatacaaatcaacacactcttatttacagtttcatatnnnnnnngta------ |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||||||| |||||| ||||| |||| || ||||| |||||||| ||| |
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|
| T |
28584874 |
ttctaagcaaaacaaaagagataacttgtaaaagaagttaagagcatgctacaaagcaacaaactcatacttacattttcatatcaaaaaagtatacatg |
28584973 |
T |
|
| Q |
133 |
----------aatgtgtacaagagatcaa-gaacatgctactatccaaagcaacactctaaaagacaatgatattcttttgtttttcacagtc-gttaaa |
220 |
Q |
| |
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||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||| |
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| T |
28584974 |
aacatattccaatgtgtacaagagatcaaagagcatgctactatccaaagcaacactctagaagacaatgatattctcttgtttttcacagtccgttaaa |
28585073 |
T |
|
| Q |
221 |
acattcttcctaaacctcaccaacaatttatttatctttcagaatatttgaatcatatataaaagcttttgacagtggatgaaatggtagaaggatcagc |
320 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||| || || |||||||||||||||||||| |
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| T |
28585074 |
acattcttcctaaacctcaccaacaatttatttatctttcaaaatctttgaatcata----aaagcttttgacggtcgaagaaatggtagaaggatcagc |
28585169 |
T |
|
| Q |
321 |
catttctctcat--tagtttgcatgtgttgaacaggtgggatgagagtaacaccaagctcttcaatgctcatggagttctgttctgtgaaagggtttctc |
418 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28585170 |
catttctctcatattagtttgcatgtgttgaacaggtgggataagagtaacaccaagctcttcaatgctcatgaagttctgttctgtgaaagggtttctc |
28585269 |
T |
|
| Q |
419 |
cacatacaaccatccattgatggtgcaacaaacatcggcttctcgtagtcctatgct |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
28585270 |
cacatacaaccatccattgatggtgcaacaaacatcggcttctcgtagtcccatgct |
28585326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 133 - 475
Target Start/End: Complemental strand, 28404814 - 28404473
Alignment:
| Q |
133 |
aatgtgtacaagagatcaagaacatgc----tactatccaaagcaacactctaaaagacaatgatattcttttgtttttcacagtcgttaaaacattctt |
228 |
Q |
| |
|
|||||||||| |||||||||| ||||| |||| ||||||||||||||||| ||||||||||||||||||||||| ||| | |||| ||| || |
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|
| T |
28404814 |
aatgtgtacatgagatcaagagcatgcatgctactgtccaaagcaacactctaggagacaatgatattcttttgttttgtacaatggttataac---ttt |
28404718 |
T |
|
| Q |
229 |
cctaaacctcaccaacaatttatttatctttcagaatatttgaatcatatataaaagcttttgacagtggatgaaatggtagaaggatcagccatttctc |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || || ||||||||||||||||||||||||||| |
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|
| T |
28404717 |
cctaaacctcaccaacaatttatttatctttcagaatatttgaatc----ataaaagcttttgacggtcgaaaaaatggtagaaggatcagccatttctc |
28404622 |
T |
|
| Q |
329 |
tc--attagtttgcatgtgttgaacaggtgggatgagagtaacaccaagctcttcaatgctcatggagttctgttctgtgaaagggtttctccacataca |
426 |
Q |
| |
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|| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28404621 |
tcatatttgttggcatgtgttgaacaggtgggatgagagtaacaccaagctcttcaatgctcatgaagttctgttctgtgaaagggtttctccacataca |
28404522 |
T |
|
| Q |
427 |
accatccattgatggtgcaacaaacatcggcttctcgtagtcctatgct |
475 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
28404521 |
accatccattgatggtgcaacgaacatcggcttctcgtagtcccatgct |
28404473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 279 - 475
Target Start/End: Original strand, 28580128 - 28580326
Alignment:
| Q |
279 |
ataaaagcttttgacagtggatgaaatggtagaaggatcagccatttctctcat--tagtttgcatgtgttgaacaggtgggatgagagtaacaccaagc |
376 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||| |||||||||||||| ||||| ||||||||| ||||||| |||| | ||||||||||||| |
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| T |
28580128 |
ataaaagcttttgacattggaggaaatggtagaaggatctgccatttctctcatattagttggcatgtgttcaacaggttggataacagtaacaccaagc |
28580227 |
T |
|
| Q |
377 |
tcttcaatgctcatggagttctgttctgtgaaagggtttctccacatacaaccatccattgatggtgcaacaaacatcggcttctcgtagtcctatgct |
475 |
Q |
| |
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| |||||| ||||| | | |||||||||||||| ||||||||||| | ||| |||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
28580228 |
ttttcaatcctcatcaattgttgttctgtgaaaggatttctccacatggcatcattcattgacggtgcaacaaacatcggcttctcgtagtcccatgct |
28580326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 28404922 - 28404870
Alignment:
| Q |
41 |
ctaagcaaaacaaaagagataacttgtaaaaggagtcaagagcatgatacaaa |
93 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||| ||| |||||| |
|
|
| T |
28404922 |
ctaagcaaaccaaaagagataacttgtaaaaggggtcaagagtatgctacaaa |
28404870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 469
Target Start/End: Original strand, 27834771 - 27834806
Alignment:
| Q |
434 |
attgatggtgcaacaaacatcggcttctcgtagtcc |
469 |
Q |
| |
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||||||||||||||||||| |||||||||||||||| |
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|
| T |
27834771 |
attgatggtgcaacaaacaccggcttctcgtagtcc |
27834806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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