View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3863_high_19 (Length: 393)
Name: NF3863_high_19
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3863_high_19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 393
Target Start/End: Original strand, 46675596 - 46675971
Alignment:
| Q |
18 |
gtgagaatttttcgcctttatgtgatttcgatgattaaattaaggattttttggttaggattagattaaggatttgataaggcagagtttaaattgaagg |
117 |
Q |
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| T |
46675596 |
gtgagaatttttcgcctttatgtgatttcgatgattaaattaaggattttttggttaggattagattaaggatttgataaggcagagtttaaattgaagg |
46675695 |
T |
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| Q |
118 |
gtttgttttgtgagtgtaatgagtgttcttaagatatgaaccattgggttggtatcaagattggtgacattttgattggatattgtggttttggcatttg |
217 |
Q |
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| T |
46675696 |
gtttgttttgtgagtgtaatgagtgttcttaagatatgaaccgttgggttggtatcaagattggtgacattttgattggatattgtggttttggcatttg |
46675795 |
T |
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| Q |
218 |
aattgatcctgttgttcttaagatatgaattttggatttggttgtttagttgttatgtaaacctgaaaagcttaagattttcattttagttttatcgcat |
317 |
Q |
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| T |
46675796 |
aattgatcctgttgttcttaagatatgaattttggatttggttgtttagttgttatgtaaacctgaaaagcttaagattttcattttagttttatcgcat |
46675895 |
T |
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| Q |
318 |
ctggaaagtttgtagtttttgataatgcttgtcactagccgtatctaatgggtgaaattggataacttggctacct |
393 |
Q |
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| T |
46675896 |
ctggaaagtttatagtttttgataatgtttgtcactagccgtatctaatgggtgaaattggataacttggctacct |
46675971 |
T |
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