View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3863_high_24 (Length: 371)
Name: NF3863_high_24
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3863_high_24 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 1866689 - 1867059
Alignment:
| Q |
1 |
ccaccacaagatcaccacaaaatcaacaattacttcatcctcacgctttctcttcttgcttttgcnnnnnnncttgtttgtattcgtgcaatttacatca |
100 |
Q |
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| T |
1866689 |
ccacaacaagatcaccacaaaatcaacaattacttcatcctcacgctttctcttcttgcttttgctttttttcttgtttgtattcgtgcaatttacgtca |
1866788 |
T |
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| Q |
101 |
gtttcaggtcaagaagaagaagaagcagcttacgggcacaaccatcatcaacaactcaacaaaatgataggaattttgatgatgaagaacaacagcatca |
200 |
Q |
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| T |
1866789 |
gtttcaggtcaagaagaagaagaagcagcttacgggcacaaccatcatcaacaactcaacaaaatgataggaattttgatgatgaagaacaacagcatca |
1866888 |
T |
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| Q |
201 |
acatggatctgtggtggatcatcctatttggtatattcgaaccttaggtcttcatcaatctgttatcaatgcaattagtgtttgtaagtataagagaggt |
300 |
Q |
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| T |
1866889 |
acatggatctgtggtggatcatcctatttggtatattcgaaccttaggtcttcatcaatctgttatcaatgcaattagtgtttgtaagtataagagaggt |
1866988 |
T |
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| Q |
301 |
gaaggtttgattgaaggaactgaatgttctgtatgtttgagtgagtttgaagaagatgagaatcttagact |
371 |
Q |
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| T |
1866989 |
gaaggtttgattgaaggaactgaatgttctgtatgtttgagtgagtttgaagaagatgagaatcttagact |
1867059 |
T |
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Target: chr4 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 203 - 371
Target Start/End: Complemental strand, 37228082 - 37227914
Alignment:
| Q |
203 |
atggatctgtggtggatcatcctatttggtatattcgaaccttaggtcttcatcaatctgttatcaatgcaattagtgtttgtaagtataagagaggtga |
302 |
Q |
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| T |
37228082 |
atggttctgttgtggaccaccctatatggtatattcgaactcctggtcttcaacaatcaattattaatgcaatcactgttgttaagtataagaaagatga |
37227983 |
T |
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| Q |
303 |
aggtttgattgaaggaactgaatgttctgtatgtttgagtgagtttgaagaagatgagaatcttagact |
371 |
Q |
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| T |
37227982 |
aggcttgattgatggatcagattgttctgtttgtttgagtgagtttgaagaagatgagaatcttagact |
37227914 |
T |
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