View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3863_high_26 (Length: 361)
Name: NF3863_high_26
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3863_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 19 - 351
Target Start/End: Original strand, 38532791 - 38533123
Alignment:
| Q |
19 |
aacaatccctcaccgatccaactaagagccattcttcactacgccacatcacgtgttgttcctcaacaatcggtctcagagatcaagatcagtttcgatg |
118 |
Q |
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| T |
38532791 |
aacaatccctcaccgatccaactaagagccattcttcactacgccacatcacgtgttgttcctcaacaatcggtctcagagatcaagatcagtttcgatg |
38532890 |
T |
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| Q |
119 |
tcttaaaaacctacgatcgaccatgcaactttcttgtcttcggacttggccatgattctctcatgtgggcttcgtttaacccaggtggcaacacattatt |
218 |
Q |
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| T |
38532891 |
tcttaaaaacctacgatcgaccatgcaactttcttgtcttcggacttggccatgattctctcatgtgggcttcgtttaacccaggtggcaacacattatt |
38532990 |
T |
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| Q |
219 |
ccttgaagaagatcctaaatgggttcaaaccgttcttaaagatgcaccgggccttcgagcccataccgttcgttatcgaacccagcttcgtgaagccaac |
318 |
Q |
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| T |
38532991 |
ccttgaagaagatcctaaatgggttcaaaccgttcttaaagatgcaccgggccttcgagcccataccgttcgttatcgaacccagcttcgtgaagccagc |
38533090 |
T |
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| Q |
319 |
aaactcatctcctcctaccgcaaggaacctatg |
351 |
Q |
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| T |
38533091 |
aaactcatctcctcctaccgcaaggaacctatg |
38533123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 34715467 - 34715422
Alignment:
| Q |
223 |
gaagaagatcctaaatgggttcaaaccgttcttaaagatgcaccgg |
268 |
Q |
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| T |
34715467 |
gaagaagatcctaaatgggttcaaaccgttctcaaagacgcaccgg |
34715422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 236
Target Start/End: Original strand, 10188847 - 10188944
Alignment:
| Q |
139 |
ccatgcaactttcttgtcttcggacttggccatgattctctcatgtgggcttcgtttaacccaggtggcaacacattattccttgaagaagatcctaa |
236 |
Q |
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|||||||||||||| || || ||| |||| || || | |||||||||| ||||||||| ||| |||||| |||| ||| || |||||||||||||| |
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| T |
10188847 |
ccatgcaactttctcgtgtttggaattggtcacgacgcactcatgtgggattcgtttaatccacgtggcatcacactatatctcgaagaagatcctaa |
10188944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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