View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3863_high_27 (Length: 361)

Name: NF3863_high_27
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3863_high_27
NF3863_high_27
[»] chr2 (6 HSPs)
chr2 (188-346)||(36101267-36101426)
chr2 (137-171)||(4453778-4453812)
chr2 (137-171)||(9208570-9208604)
chr2 (137-184)||(3625169-3625215)
chr2 (141-171)||(997820-997850)
chr2 (137-171)||(7161816-7161850)
[»] chr1 (7 HSPs)
chr1 (13-175)||(31771270-31771432)
chr1 (13-176)||(7608282-7608445)
chr1 (49-109)||(7608249-7608309)
chr1 (49-109)||(31771237-31771297)
chr1 (137-171)||(32440669-32440703)
chr1 (137-172)||(1721555-1721590)
chr1 (141-171)||(22368223-22368253)
[»] scaffold0152 (1 HSPs)
scaffold0152 (75-171)||(10195-10291)
[»] scaffold0003 (2 HSPs)
scaffold0003 (75-174)||(36966-37065)
scaffold0003 (136-171)||(43199-43234)
[»] chr6 (2 HSPs)
chr6 (97-171)||(31444771-31444845)
chr6 (136-171)||(27444127-27444162)
[»] chr3 (5 HSPs)
chr3 (117-171)||(19766014-19766068)
chr3 (137-172)||(46233983-46234018)
chr3 (137-171)||(11394018-11394052)
chr3 (153-191)||(31685041-31685079)
chr3 (75-160)||(31687881-31687966)
[»] chr8 (2 HSPs)
chr8 (137-172)||(44663703-44663738)
chr8 (97-172)||(35348990-35349066)
[»] chr4 (5 HSPs)
chr4 (136-171)||(26720237-26720272)
chr4 (137-171)||(32651290-32651324)
chr4 (137-169)||(3649873-3649905)
chr4 (97-186)||(38467690-38467777)
chr4 (137-171)||(41810171-41810205)
[»] scaffold0014 (1 HSPs)
scaffold0014 (136-171)||(32615-32650)
[»] chr7 (2 HSPs)
chr7 (137-172)||(21820194-21820229)
chr7 (141-171)||(16262706-16262736)


Alignment Details
Target: chr2 (Bit Score: 148; Significance: 5e-78; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 188 - 346
Target Start/End: Original strand, 36101267 - 36101426
Alignment:
Q  188 attactgtgtggcatatatgctcattgcgctacccc-accctcaaatagtaataattattcctaatacgtgacaacttcacgtggatttcatatgtttgt 286  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36101267 attactgtgtggcatatatgctcattgcgctacccccaccctcaaataataataattattcctaatacgtgacaacttcacgtggatttcatatgtttgt 36101366  T
Q  287 gcgatttgccttgtaagtactagaaactagaaagtgatggtgcaacaaattcttgattat 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36101367 gcgatttgccttgtaagtactagaaactagaaagtgatggtgcaacaaattcttgattat 36101426  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 171
Target Start/End: Complemental strand, 4453812 - 4453778
Alignment:
Q  137 ttggagtgttaactaggattaggaataagttagat 171  Q
    |||||||||||||||||||||||||||||||||||    
T  4453812 ttggagtgttaactaggattaggaataagttagat 4453778  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 171
Target Start/End: Complemental strand, 9208604 - 9208570
Alignment:
Q  137 ttggagtgttaactaggattaggaataagttagat 171  Q
    |||||||||||||||||||||||||||||||||||    
T  9208604 ttggagtgttaactaggattaggaataagttagat 9208570  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 3625215 - 3625169
Alignment:
Q  137 ttggagtgttaactaggattaggaataagttagatagatagattagat 184  Q
    |||||||||||| ||||||||||||||||||||| || ||||||||||    
T  3625215 ttggagtgttaattaggattaggaataagttaga-agttagattagat 3625169  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 171
Target Start/End: Complemental strand, 997850 - 997820
Alignment:
Q  141 agtgttaactaggattaggaataagttagat 171  Q
    |||||||||||||||||||||||||||||||    
T  997850 agtgttaactaggattaggaataagttagat 997820  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 171
Target Start/End: Complemental strand, 7161850 - 7161816
Alignment:
Q  137 ttggagtgttaactaggattaggaataagttagat 171  Q
    |||||||||||||||||||||| ||||||||||||    
T  7161850 ttggagtgttaactaggattagaaataagttagat 7161816  T

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Target: chr1 (Bit Score: 131; Significance: 7e-68; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 13 - 175
Target Start/End: Original strand, 31771270 - 31771432
Alignment:
Q  13 aagggctgagggttgttggcgcctaaaacaggagaaaaaggaggaaaaaattgcaaacagattagatccaagggctgaggtttgttggcgcctaaaatat 112  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  31771270 aagggctgaggtttgttggcgcctaaaacaggagaaaaatgaggaaaaaattgcaaacagattagatccaagggctgaggtttgttggcgcctaaaacag 31771369  T
Q  113 gggaattagggtttggagtattttttggagtgttaactaggattaggaataagttagatagat 175  Q
    | ||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||    
T  31771370 gagaattagggttgggagtgttatttggagtgttaactaggattaggaataagttagatagat 31771432  T

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Target: chr1; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 13 - 176
Target Start/End: Original strand, 7608282 - 7608445
Alignment:
Q  13 aagggctgagggttgttggcgcctaaaacaggagaaaaaggaggaaaaaattgcaaacagattagatccaagggctgaggtttgttggcgcctaaaatat 112  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |     
T  7608282 aagggctgaggtttgttggcgcctaaaacaggagaaaaaggaggaaaaaattgcaaacagattagatccaagggctgagatttgttggcgcctaaaacag 7608381  T
Q  113 gggaattagggtttggagtattttttggagtgttaactaggattaggaataagttagatagata 176  Q
    | ||||||||||| ||||| || |||||||| ||||||||||||||||||||||||||||||||    
T  7608382 gagaattagggttgggagtgttatttggagttttaactaggattaggaataagttagatagata 7608445  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 7608249 - 7608309
Alignment:
Q  49 aaaggaggaaaaaattgcaaacagattagatccaagggctgaggtttgttggcgcctaaaa 109  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7608249 aaaggaggaaaaaatggcaaacagattagatccaagggctgaggtttgttggcgcctaaaa 7608309  T

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Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 31771237 - 31771297
Alignment:
Q  49 aaaggaggaaaaaattgcaaacagattagatccaagggctgaggtttgttggcgcctaaaa 109  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  31771237 aaaggaggaaaaactggcaaacagattagatccaagggctgaggtttgttggcgcctaaaa 31771297  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 171
Target Start/End: Original strand, 32440669 - 32440703
Alignment:
Q  137 ttggagtgttaactaggattaggaataagttagat 171  Q
    |||||||||||||||||||||||||||||||||||    
T  32440669 ttggagtgttaactaggattaggaataagttagat 32440703  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 172
Target Start/End: Complemental strand, 1721590 - 1721555
Alignment:
Q  137 ttggagtgttaactaggattaggaataagttagata 172  Q
    |||||||||||| |||||||||||||||||||||||    
T  1721590 ttggagtgttaattaggattaggaataagttagata 1721555  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 171
Target Start/End: Original strand, 22368223 - 22368253
Alignment:
Q  141 agtgttaactaggattaggaataagttagat 171  Q
    |||||||||||||||||||||||||||||||    
T  22368223 agtgttaactaggattaggaataagttagat 22368253  T

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Target: scaffold0152 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 75 - 171
Target Start/End: Complemental strand, 10291 - 10195
Alignment:
Q  75 tagatccaagggctgaggtttgtt-ggcgcctaaaatatgggaattagggtttggagtattttttggagtgttaactaggattaggaataagttagat 171  Q
    |||||||||||||| ||| ||||| ||||||||||| |   ||||||||||||||||| ||  |||||||||||||||||||| ||||||||||||||    
T  10291 tagatccaagggct-aggattgtttggcgcctaaaaaagtagaattagggtttggagtgttaattggagtgttaactaggattgggaataagttagat 10195  T

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Target: scaffold0003 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 75 - 174
Target Start/End: Original strand, 36966 - 37065
Alignment:
Q  75 tagatccaagggctgaggtttgtt-ggcgcctaaaatatgggaattagggtttggagtattttttggagtgttaactaggattaggaataagttagatag 173  Q
    |||||||||||||| ||| ||||| ||||||||||| |   |||||||| |||| ||| ||  |||||||||||| ||||||||||||||||||||||||    
T  36966 tagatccaagggct-aggattgtttggcgcctaaaaaagaagaattaggatttgaagtgttaattggagtgttaattaggattaggaataagttagatag 37064  T

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Target: scaffold0003; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 136 - 171
Target Start/End: Original strand, 43199 - 43234
Alignment:
Q  136 tttggagtgttaactaggattaggaataagttagat 171  Q
    |||||||||||||||| |||||||||||||||||||    
T  43199 tttggagtgttaactacgattaggaataagttagat 43234  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 97 - 171
Target Start/End: Complemental strand, 31444845 - 31444771
Alignment:
Q  97 ttggcgcctaaaatatgggaattagggtttggagtattttttggagtgttaactaggattaggaataagttagat 171  Q
    ||||||||||||||    ||||||||||||  |||| |  |||||||||||||||||||||||||||||||||||    
T  31444845 ttggcgcctaaaattatagaattagggttttaagtagtaattggagtgttaactaggattaggaataagttagat 31444771  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 136 - 171
Target Start/End: Complemental strand, 27444162 - 27444127
Alignment:
Q  136 tttggagtgttaactaggattaggaataagttagat 171  Q
    |||||||||||||||| |||||||||||||||||||    
T  27444162 tttggagtgttaactacgattaggaataagttagat 27444127  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 19766068 - 19766014
Alignment:
Q  117 attagggtttggagtattttttggagtgttaactaggattaggaataagttagat 171  Q
    ||||||||||||||| ||  |||||||||||||||||||||| ||||||||||||    
T  19766068 attagggtttggagtgttaattggagtgttaactaggattagaaataagttagat 19766014  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 172
Target Start/End: Original strand, 46233983 - 46234018
Alignment:
Q  137 ttggagtgttaactaggattaggaataagttagata 172  Q
    ||||||||||||||||||||||||||||||||||||    
T  46233983 ttggagtgttaactaggattaggaataagttagata 46234018  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 171
Target Start/End: Complemental strand, 11394052 - 11394018
Alignment:
Q  137 ttggagtgttaactaggattaggaataagttagat 171  Q
    |||||||||||||||||||||| ||||||||||||    
T  11394052 ttggagtgttaactaggattagaaataagttagat 11394018  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 191
Target Start/End: Complemental strand, 31685079 - 31685041
Alignment:
Q  153 gattaggaataagttagatagatagattagattagatta 191  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  31685079 gattaggaataagttagatagataagttagattagatta 31685041  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 160
Target Start/End: Complemental strand, 31687966 - 31687881
Alignment:
Q  75 tagatccaagggctgaggtttgtt-ggcgcctaaaatatgggaattagggtttggagtattttttggagtgttaactaggattagga 160  Q
    |||||||||||||| ||| ||||| ||||||||||| |   ||||||||||||||||| |   |||||||||||||||||| |||||    
T  31687966 tagatccaagggct-aggattgtttggcgcctaaaaaagtagaattagggtttggagtgtaagttggagtgttaactaggactagga 31687881  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 172
Target Start/End: Original strand, 44663703 - 44663738
Alignment:
Q  137 ttggagtgttaactaggattaggaataagttagata 172  Q
    ||||||||||||||||||||||||||||||||||||    
T  44663703 ttggagtgttaactaggattaggaataagttagata 44663738  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 172
Target Start/End: Complemental strand, 35349066 - 35348990
Alignment:
Q  97 ttggcgcctaaaatatgg-gaattagggtttggagtattttttggagtgttaactaggattaggaataagttagata 172  Q
    ||||||||||||||| |  |||||||| |||  ||| ||  |||||||||||||||||||||| |||||||||||||    
T  35349066 ttggcgcctaaaataagtagaattaggattttaagtgttaattggagtgttaactaggattagaaataagttagata 35348990  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 171
Target Start/End: Complemental strand, 26720272 - 26720237
Alignment:
Q  136 tttggagtgttaactaggattaggaataagttagat 171  Q
    ||||||||||||||||||||||||||||||||||||    
T  26720272 tttggagtgttaactaggattaggaataagttagat 26720237  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 171
Target Start/End: Original strand, 32651290 - 32651324
Alignment:
Q  137 ttggagtgttaactaggattaggaataagttagat 171  Q
    |||||||||||||||||||||||||||||||||||    
T  32651290 ttggagtgttaactaggattaggaataagttagat 32651324  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 169
Target Start/End: Complemental strand, 3649905 - 3649873
Alignment:
Q  137 ttggagtgttaactaggattaggaataagttag 169  Q
    |||||||||||||||||||||||||||||||||    
T  3649905 ttggagtgttaactaggattaggaataagttag 3649873  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 186
Target Start/End: Original strand, 38467690 - 38467777
Alignment:
Q  97 ttggcgcctaaaatatgg-gaattagggtttggagtattttttggagtgttaactaggattaggaataagttagatagatagattagatta 186  Q
    ||||||||||||||| |  ||||||||||||  ||| ||  |||||||||||||||||||||  ||||||||||||   ||||||||||||    
T  38467690 ttggcgcctaaaataagtagaattagggttttaagtgttaattggagtgttaactaggattataaataagttagat---tagattagatta 38467777  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 171
Target Start/End: Complemental strand, 41810205 - 41810171
Alignment:
Q  137 ttggagtgttaactaggattaggaataagttagat 171  Q
    |||||||||||||||||||||| ||||||||||||    
T  41810205 ttggagtgttaactaggattagaaataagttagat 41810171  T

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Target: scaffold0014 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 136 - 171
Target Start/End: Complemental strand, 32650 - 32615
Alignment:
Q  136 tttggagtgttaactaggattaggaataagttagat 171  Q
    ||||||||||||||||||||||| ||||||||||||    
T  32650 tttggagtgttaactaggattagaaataagttagat 32615  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 172
Target Start/End: Original strand, 21820194 - 21820229
Alignment:
Q  137 ttggagtgttaactaggattaggaataagttagata 172  Q
    |||||||||||| |||||||||||||||||||||||    
T  21820194 ttggagtgttaattaggattaggaataagttagata 21820229  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 171
Target Start/End: Original strand, 16262706 - 16262736
Alignment:
Q  141 agtgttaactaggattaggaataagttagat 171  Q
    |||||||||||||||||||||||||||||||    
T  16262706 agtgttaactaggattaggaataagttagat 16262736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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