View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3863_high_29 (Length: 344)
Name: NF3863_high_29
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3863_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 16 - 331
Target Start/End: Complemental strand, 45624510 - 45624195
Alignment:
| Q |
16 |
atggaccggcccgattcaaaccatgggacttaatagcagcagtttcagtctgcttaacaacaccaactttataccctgcactaacaagcctcctcacatg |
115 |
Q |
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| T |
45624510 |
atggaccggcccgattcaaaccatgggacttaatagcagcagtttcagtctgcttaacaacgccaactttataccctgcactaacaagcctcctcacatg |
45624411 |
T |
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| Q |
116 |
gacatttaatcgaaaagttggtatgctagcagttaaaaaattatgatccatatgagcataaatacccaaaacccttgcagcattctcagcatcttcgccg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45624410 |
gacatttaatcgaaaagttggtatgctagcagttaaaaaattatgatccatatgagcataaatacccaaaacccttgcagcattctcagcatcttcgccg |
45624311 |
T |
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| Q |
216 |
aaaaatcgatacttgtaaccaacttcaatcattaaaagaacatcaggatacttagctttgagttccactacctgatgctctaaaggagtaaactttacag |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45624310 |
aaaaatcgatacttgtaaccaacttcaatcattaaaagaacatcagggtacttagctttgagttccactacctgatgctctaaaggagtaaattttacag |
45624211 |
T |
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| Q |
316 |
gtttggaagatgaagg |
331 |
Q |
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|||||||||||||||| |
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| T |
45624210 |
gtttggaagatgaagg |
45624195 |
T |
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