View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3863_high_31 (Length: 336)
Name: NF3863_high_31
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3863_high_31 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 38533138 - 38533469
Alignment:
| Q |
1 |
agcttttctacgtggaaacaaagcatgcaagcttgcgcttgagaatttacccgatgaggtttacgatacggagtgggatcttattatgatcgatgcgccg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38533138 |
agcttttctacgtggaaacaaagcatgcaagcttgcgcttgagaatttacccgatgaggtttacgatacggagtgggatcttattatgatcgatgcgccg |
38533237 |
T |
|
| Q |
101 |
aaagggtatttcgcggaggcgccggggagaatggcggcggtgttttcagctgctgttatggcgaggaataggaagggatctggtgtgacgcatgtgtttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38533238 |
aaagggtatttcgcggaggcgccggggagaatggcggcggtgttttcagctgctgttatggcgaggaataggaagggatctggtgtgacgcatgtgtttt |
38533337 |
T |
|
| Q |
201 |
tgcatgatgtggatcgtagggttgagaaactttatgctgatgagtttctttgtaagaagaatttggttaaaggtgttggaaggctttggcattttcagat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38533338 |
tgcatgatgtggatcgtagggttgagaaactttatgctgatgagtttctttgtaagaagaatttggttaaaggtgttggaaggctttggcattttcagat |
38533437 |
T |
|
| Q |
301 |
agcaccgtttaatggcacaggttctgctcgtt |
332 |
Q |
| |
|
|||||||||||||||||| | |||| |||||| |
|
|
| T |
38533438 |
agcaccgtttaatggcactgattctcctcgtt |
38533469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 9e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 53 - 291
Target Start/End: Complemental strand, 34715272 - 34715034
Alignment:
| Q |
53 |
gatgaggtttacgatacggagtgggatcttattatgatcgatgcgccgaaagggtatttcgcggaggcgccggggagaatggcggcggtgttttcagctg |
152 |
Q |
| |
|
|||||| ||||||| |||||||||||| | || |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
34715272 |
gatgagatttacgaaacggagtgggatttgataatgatcgatgcgccgagaggttatttcgcggaggcgccggggagaatggcggcgatattttcaatga |
34715173 |
T |
|
| Q |
153 |
ctgttatggcgaggaataggaagggatctggtgtgacgcatgtgtttttgcatgatgtggatcgtagggttgagaaactttatgctgatgagtttctttg |
252 |
Q |
| |
|
| || |||||||| ||||| || || || ||||||||||| ||||||||||||||||||||||| | |||||||||| ||||||| || || |||||||| |
|
|
| T |
34715172 |
cggtgatggcgagaaatagaaaaggttccggtgtgacgcacgtgtttttgcatgatgtggatcggaaggttgagaaagtttatgccgaagaatttctttg |
34715073 |
T |
|
| Q |
253 |
taagaagaatttggttaaaggtgttggaaggctttggca |
291 |
Q |
| |
|
|| |||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
34715072 |
taggaagaatttggtgaaaggtgttggtaggctttggca |
34715034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 10189258 - 10189323
Alignment:
| Q |
182 |
ggtgtgacgcatgtgtttttgcatgatgtggatcgtagggttgagaaactttatgctgatgagttt |
247 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| | ||||||||||||||||||| | |||||| |
|
|
| T |
10189258 |
ggtgtgacgcatgtgtttcttcatgatgtggatagggaggttgagaaactttatgctaaggagttt |
10189323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University