View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3863_high_35 (Length: 313)
Name: NF3863_high_35
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3863_high_35 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 41 - 296
Target Start/End: Original strand, 8425578 - 8425837
Alignment:
| Q |
41 |
attttgtctttccttgaattatgtttaattggttggatttagaagatgattaattggtcgaatnnnnnnnnnnnta-----catgatattagagtaaatg |
135 |
Q |
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| T |
8425578 |
attttgtctttccttgacttatgtttaattggttggatttagaagatgattaattggtcggataaaaaaaatattaaattacatgatattagagtaaatg |
8425677 |
T |
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| Q |
136 |
agtaaattatcttttttatcaaatcatattgtgctatgtcctaattagattagattaacattcaaacaagatagaattgaatcaaagttcagtggttaga |
235 |
Q |
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| T |
8425678 |
agtaaattatctttt-tatcaaatcatactgtgctatgtcctaattagattagattaacattcaaacaagatagaattgaatcaaagttcagtggttaga |
8425776 |
T |
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| Q |
236 |
acttagtcttgtaatctcaattcaagtatagagtttaaagttcatcgaaaattattgtaaa |
296 |
Q |
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| T |
8425777 |
acttagtcttgtaatctcaattcaagtatagagtttaaagttcatcgaaaattgttgtaaa |
8425837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 8425510 - 8425556
Alignment:
| Q |
1 |
caagagagaatcatctttatgtttttaggtctttcaagagattttgt |
47 |
Q |
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| T |
8425510 |
caagagagaatcatctttatgtttttaggtctttcaagagattttgt |
8425556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 26849325 - 26849358
Alignment:
| Q |
14 |
tctttatgtttttaggtctttcaagagattttgt |
47 |
Q |
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| T |
26849325 |
tctttatgtttttaggtcttgcaagagattttgt |
26849358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 98
Target Start/End: Original strand, 26849420 - 26849449
Alignment:
| Q |
69 |
ttggttggatttagaagatgattaattggt |
98 |
Q |
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| T |
26849420 |
ttggttggatttagaagatgattaattggt |
26849449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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