View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3863_high_38 (Length: 298)
Name: NF3863_high_38
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3863_high_38 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 3e-82; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 14148387 - 14148221
Alignment:
| Q |
1 |
cctataaacagcaatgtgtggagaaccaacgaaagaaaaattacttagaatcctaagcatgagggtttctcagtaaattgtgtgaacctggaatgagttt |
100 |
Q |
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| T |
14148387 |
cctataaacagcaatgtgtggagaaccaacgaaagaaaaattagttagaatccaaagcatgagggtttctcagtaaattgtgtgaacctagaatgagttt |
14148288 |
T |
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| Q |
101 |
ataatgatagttggaatagtaagacatatgaaagataaattcaacgaattaaataactacatcaagg |
167 |
Q |
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| T |
14148287 |
ataatgatagttggaatagtaagacatatgaaagataaattcaacgaattaaataactacatcaagg |
14148221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 55 - 158
Target Start/End: Complemental strand, 14496650 - 14496550
Alignment:
| Q |
55 |
aagcatgagggtttctcagtaaattgtgtgaacctggaatgagtttataatgatagttggaatagtaagacatatgaaagataaattcaacgaattaaat |
154 |
Q |
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| T |
14496650 |
aagcatgagtgtttctcatgaaattgtgtgaacctgcaatgagtttatactgatagttg---tagtaagacataagaaagaaaagttcaacaaattaaat |
14496554 |
T |
|
| Q |
155 |
aact |
158 |
Q |
| |
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|||| |
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| T |
14496553 |
aact |
14496550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 158
Target Start/End: Original strand, 14479556 - 14479649
Alignment:
| Q |
66 |
tttctcagtaaattgtgtgaacctggaatgagtttataatgatagttggaatagtaagacatatg-aaagataaattcaacgaattaaataact |
158 |
Q |
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| T |
14479556 |
tttctcaggaaattgtgtgaacctacaatgactttaaattgacaattagaatagtaagacataagaaaagataaactccacaaattcaataact |
14479649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 39 - 144
Target Start/End: Original strand, 9812363 - 9812469
Alignment:
| Q |
39 |
aattacttagaatcctaagcatg-agggtttctcagtaaattgtgtgaacctggaatgagtttataatgatagttggaatagtaagacatatgaaagata |
137 |
Q |
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|||||||||||||| ||||||| ||||||| ||||||||||| ||||||| |||||||| |||| |||||||||||||||||||||||| |||||||| |
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| T |
9812363 |
aattacttagaatctaaagcatgcagggttttgcagtaaattgtatgaacctagaatgagtctatactgatagttggaatagtaagacataagaaagata |
9812462 |
T |
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| Q |
138 |
aattcaa |
144 |
Q |
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||||||| |
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| T |
9812463 |
aattcaa |
9812469 |
T |
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