View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3863_high_39 (Length: 281)
Name: NF3863_high_39
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3863_high_39 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 1867606 - 1867343
Alignment:
| Q |
18 |
actaggaacaccctgcaaatatcttgttggcctaaaagaaaagctactgctgcctttggaagtagttgccaaattctcgtttccattaacctttgaaata |
117 |
Q |
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| T |
1867606 |
actaggaacaccctgcaaatatcttgttggcctaaaagaaaagctactgctgcctttggaagtagttgccaaattctcgtttccattaacctttgaaata |
1867507 |
T |
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| Q |
118 |
gcttcatcattgaaactcattttacttgaatcaccattaccattagactcaattgatagaacagttgcaaaagcaaaattgtccatagaaactgatctcc |
217 |
Q |
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| T |
1867506 |
gcatcatcattgaaactcattttacttgaatcaccattaccattagactcaattgatagaacagttgcaaaagcaaaattgtccatagaaactgatctcc |
1867407 |
T |
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| Q |
218 |
taggccgaacgatgctaaccacatcgacaacttgcctatcattttcacatacctcggactgccc |
281 |
Q |
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| T |
1867406 |
taggccgaacgatgctaaccacatcgacaacttgcctttcattttcacatacctcggactgccc |
1867343 |
T |
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