View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3863_high_4 (Length: 719)

Name: NF3863_high_4
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3863_high_4
NF3863_high_4
[»] chr8 (2 HSPs)
chr8 (179-690)||(3427967-3428478)
chr8 (31-180)||(3427795-3427944)
[»] chr5 (5 HSPs)
chr5 (181-323)||(9211459-9211606)
chr5 (181-323)||(9369879-9370026)
chr5 (142-177)||(19242401-19242436)
chr5 (135-177)||(9211389-9211431)
chr5 (144-177)||(12560227-12560260)
[»] chr3 (6 HSPs)
chr3 (142-177)||(20798780-20798815)
chr3 (135-177)||(9450789-9450831)
chr3 (135-177)||(17724638-17724680)
chr3 (135-177)||(19025867-19025909)
chr3 (135-177)||(26640805-26640847)
chr3 (135-177)||(28838401-28838443)
[»] chr7 (1 HSPs)
chr7 (135-177)||(19545424-19545466)
[»] chr1 (2 HSPs)
chr1 (135-177)||(1466862-1466904)
chr1 (135-177)||(35923325-35923367)


Alignment Details
Target: chr8 (Bit Score: 476; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 179 - 690
Target Start/End: Original strand, 3427967 - 3428478
Alignment:
Q  179 aggtgcaatggaggtcacacgcctagacgatgggccttcttgatcacaacaccttccaggtaagtatgttgcaatgtgtcacacacttctattttataac 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  3427967 aggtgcaatggaggtcacacgcctagacgatgggccttcttgatcacaacacctgccaggtaagtatgctgcaatgtgtcacacacttctattttataac 3428066  T
Q  279 tcatgctccacattattcactacaaatcttccgatgtgggacttatattatgacattctaaacaccattcaagtgtcagcagttcataccctagctcaca 378  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3428067 tcatgctccacattattcactataaatcttccgatgtgggacttttattattacattctaaacaccattcaagtgtcagcagttcataccctagctcaca 3428166  T
Q  379 catttgctactccattagatccaaatagacagagcatgtttaatcatattgcagttgttgaatccgatattttttgttgaactgataatatgcgttacaa 478  Q
    ||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3428167 catttgccactccattagatccaaatagacaaagtatgtttaatcatattgcagttgttgaatccgatattttttgttgaactgataatatgcgttacaa 3428266  T
Q  479 aggctatgaataaacttggtctcactgatgactaattttgtgtagaaaaacttcaaatgtcttactcaaaaagctcttgcagaaaccaattaaggaatgt 578  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3428267 aggctatgaataaacttggtctcactgatgactaattttgtgtagaaaaacttcaaatgtcttactcaaaaagctcttgcagaaaccaattaaggaatgt 3428366  T
Q  579 ttttgctccttgatctcctaactttccctctattttctatttttctagaacagttatgtatatcatgtaaggaaaccttttctagtgccattactatacc 678  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3428367 ttttgctccttgatctcctaactttccctatattttctatttttctagaacagttatgtatatcatgtaaggaaaccttttctagtgccattactatacc 3428466  T
Q  679 tatttttacttt 690  Q
    ||||||||||||    
T  3428467 tatttttacttt 3428478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 31 - 180
Target Start/End: Original strand, 3427795 - 3427944
Alignment:
Q  31 taagtagtagcttccatcggatatttacccaacctaatcagcccgcaaatttcaaccttcaacaattgcatcaaaaggagaagatgagcacagtatatta 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3427795 taagtagtagcttccatcggatatttacccaacctaatcagcccgcaaatttcaaccttcaacaattgcatcaaaaggagaagatgagcacaatatatta 3427894  T
Q  131 gcatgcccctactgcaacaaattatgatgtaagctccaccacttgggcag 180  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  3427895 gcatgcccctactgcaacaaattacgatgtaaactccaccacttgggcag 3427944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 8e-23; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 181 - 323
Target Start/End: Original strand, 9211459 - 9211606
Alignment:
Q  181 gtgcaatggaggtcacacgcctagacgatgggccttcttgatcaca-----acaccttccaggtaagtatgttgcaatgtgtcacacacttctattttat 275  Q
    |||||||| |||||||  |||||| | |||||||||| |||||||      || || |||||||||||||||| |||||| ||||||| |||| ||||||    
T  9211459 gtgcaatgaaggtcacttgcctaggccatgggccttcctgatcacccattgaccccatccaggtaagtatgttacaatgtatcacacaattctgttttat 9211558  T
Q  276 aactcatgctccacattattcactacaaatcttccgatgtgggactta 323  Q
    ||||||||||||| |  |||||||| ||| ||||||||||||||||||    
T  9211559 aactcatgctccataacattcactataaaacttccgatgtgggactta 9211606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 181 - 323
Target Start/End: Complemental strand, 9370026 - 9369879
Alignment:
Q  181 gtgcaatggaggtcacacgcctagacgatgggccttcttgatcaca-----acaccttccaggtaagtatgttgcaatgtgtcacacacttctattttat 275  Q
    |||||||| |||||||  |||||| | ||||||||| ||||||||      || || ||||||||||||||||||||||  ||||||| |||| ||||||    
T  9370026 gtgcaatgaaggtcacttgcctaggccatgggcctttttgatcacccattgaccccatccaggtaagtatgttgcaatgaatcacacaattctcttttat 9369927  T
Q  276 aactcatgctccacattattcactacaaatcttccgatgtgggactta 323  Q
    ||||||||||||| |  |||||||| ||| ||||||||||||||||||    
T  9369926 aactcatgctccataacattcactataaaacttccgatgtgggactta 9369879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 177
Target Start/End: Original strand, 19242401 - 19242436
Alignment:
Q  142 ctgcaacaaattatgatgtaagctccaccacttggg 177  Q
    |||||||||||||||||||| |||||||||||||||    
T  19242401 ctgcaacaaattatgatgtaggctccaccacttggg 19242436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 135 - 177
Target Start/End: Original strand, 9211389 - 9211431
Alignment:
Q  135 gcccctactgcaacaaattatgatgtaagctccaccacttggg 177  Q
    ||||| || |||||||||||||||||| |||||||||||||||    
T  9211389 gcccccacagcaacaaattatgatgtaggctccaccacttggg 9211431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 177
Target Start/End: Complemental strand, 12560260 - 12560227
Alignment:
Q  144 gcaacaaattatgatgtaagctccaccacttggg 177  Q
    |||||||||||||||||| |||||||||||||||    
T  12560260 gcaacaaattatgatgtaggctccaccacttggg 12560227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 177
Target Start/End: Original strand, 20798780 - 20798815
Alignment:
Q  142 ctgcaacaaattatgatgtaagctccaccacttggg 177  Q
    |||||||||||||||||||| |||||||||||||||    
T  20798780 ctgcaacaaattatgatgtaggctccaccacttggg 20798815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 135 - 177
Target Start/End: Complemental strand, 9450831 - 9450789
Alignment:
Q  135 gcccctactgcaacaaattatgatgtaagctccaccacttggg 177  Q
    ||||| || |||||||||||||||||| |||||||||||||||    
T  9450831 gcccccacagcaacaaattatgatgtaggctccaccacttggg 9450789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 135 - 177
Target Start/End: Complemental strand, 17724680 - 17724638
Alignment:
Q  135 gcccctactgcaacaaattatgatgtaagctccaccacttggg 177  Q
    ||||| || |||||||||||||||||| |||||||||||||||    
T  17724680 gcccccacagcaacaaattatgatgtaggctccaccacttggg 17724638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 135 - 177
Target Start/End: Complemental strand, 19025909 - 19025867
Alignment:
Q  135 gcccctactgcaacaaattatgatgtaagctccaccacttggg 177  Q
    ||||| || |||||||||||||||||| |||||||||||||||    
T  19025909 gcccccacagcaacaaattatgatgtaggctccaccacttggg 19025867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 135 - 177
Target Start/End: Complemental strand, 26640847 - 26640805
Alignment:
Q  135 gcccctactgcaacaaattatgatgtaagctccaccacttggg 177  Q
    ||||| ||||||||||||||||||||| | |||||||||||||    
T  26640847 gcccccactgcaacaaattatgatgtaggttccaccacttggg 26640805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 135 - 177
Target Start/End: Original strand, 28838401 - 28838443
Alignment:
Q  135 gcccctactgcaacaaattatgatgtaagctccaccacttggg 177  Q
    ||||| || |||||||||||||||||| |||||||||||||||    
T  28838401 gcccccacagcaacaaattatgatgtaggctccaccacttggg 28838443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 135 - 177
Target Start/End: Original strand, 19545424 - 19545466
Alignment:
Q  135 gcccctactgcaacaaattatgatgtaagctccaccacttggg 177  Q
    ||||| || |||||||||||||||||| |||||||||||||||    
T  19545424 gcccccacagcaacaaattatgatgtaggctccaccacttggg 19545466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 135 - 177
Target Start/End: Complemental strand, 1466904 - 1466862
Alignment:
Q  135 gcccctactgcaacaaattatgatgtaagctccaccacttggg 177  Q
    ||||| || |||||||||||||||||| |||||||||||||||    
T  1466904 gcccccacagcaacaaattatgatgtaggctccaccacttggg 1466862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 135 - 177
Target Start/End: Complemental strand, 35923367 - 35923325
Alignment:
Q  135 gcccctactgcaacaaattatgatgtaagctccaccacttggg 177  Q
    ||||| || |||||||||||||||||| |||||||||||||||    
T  35923367 gcccccacagcaacaaattatgatgtaggctccaccacttggg 35923325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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