View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3863_high_5 (Length: 717)
Name: NF3863_high_5
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3863_high_5 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 615; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 11 - 717
Target Start/End: Complemental strand, 2182400 - 2181694
Alignment:
| Q |
11 |
caaaggcagtgattgttggaggtagcataggagggatatcaagtgcacatgcccttatcttagctggttgggatgtccttgtccttgaaaaaaccacctc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2182400 |
caaaggcagtgattgttggaggtagcataggagggatatcaagtgcacatgcccttatcttagctggttgggatgtccttgtccttgaaaaaaccacctc |
2182301 |
T |
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| Q |
111 |
acctccaactggaagtcctactggtgcaggtcttggactcaactccttctctcaacaaatcattcaatcttggatttcaaaaccaccacagttcctacac |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2182300 |
acctccaactggaagtcctactggtgcaggtcttggactcaactccctctctcaacaaatcattcaatcttggatttcaaaaccaccacaattcctacac |
2182201 |
T |
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| Q |
211 |
aacaccactcatccactaactattgatcaggtctatttccaccatctctttatctttattttatttgcttaatgttactatattaatatcaattatgtca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2182200 |
aacaccactcatccactaactattgatcaggtctatttccaccatctctttatctttattttatttgcttaatgttactatattaatatcaattatctca |
2182101 |
T |
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| Q |
311 |
tttgtccatgaagtgtttgtttagtggtacgagctcgactttataactttaactgatagagttccaatctcatgtaggacaattgtaaaatgattgatca |
410 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2182100 |
tttgtcaatgaagtgtttgtttagtggtacgagctcgactttataactttaactgatagagttccaatctcatgtaggacaattgtaaaatgattgatca |
2182001 |
T |
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| Q |
411 |
taaatctaggctgt-aacaactagacaaggacttaattcatatacttcgtcagtgtaaagaacttttacattttcaatcaatcataaccgtcaaatcatt |
509 |
Q |
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|||||||| | ||| || ||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2182000 |
taaatctacggtgtaaagaacgagacaaggatttaa-tcatatacttcgtcagtgtaaagaacttttacattttcaatcaatcataacagtcaaatcatt |
2181902 |
T |
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| Q |
510 |
agaataatttaatttttatcaaaatcactactaaagtaacatacatgattggttgtgttgggttgacagtgtaaaaggtttaacaatgacaatgcgtgaa |
609 |
Q |
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| T |
2181901 |
agaataatttgatttttatcataatcactactaaagtaacatacatgattggttgtgttgggttgacagtgtaaaaggtttaacaatgacaatgcgtgaa |
2181802 |
T |
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| Q |
610 |
aattaaacttaacgaaagtgttatttgtttttgtatcnnnnnnnaatcttgaacagaacctggtgactgatagtgagaagaaggctaataggacattgac |
709 |
Q |
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| T |
2181801 |
aattaaacttaacgaaagtgttatttgtttttgtatctttttttaatcttgaacagaacctggtaactgatagtgagaagaaggttaataggacattgac |
2181702 |
T |
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| Q |
710 |
aagagatg |
717 |
Q |
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|||||||| |
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| T |
2181701 |
aagagatg |
2181694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 11 - 185
Target Start/End: Original strand, 2184173 - 2184347
Alignment:
| Q |
11 |
caaaggcagtgattgttggaggtagcataggagggatatcaagtgcacatgcccttatcttagctggttgggatgtccttgtccttgaaaaaaccacctc |
110 |
Q |
| |
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|||| |||||||||||||| |||||||||| || |||||||||||| |||| |||| ||||| ||||||||||| |||| ||||||||||||| || |
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| T |
2184173 |
caaaagcagtgattgttgggggtagcatagctggtatatcaagtgcaaatgctcttactttagcaggttgggatgttattgttcttgaaaaaaccatttc |
2184272 |
T |
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| Q |
111 |
acctccaactggaagtcctactggtgcaggtcttggactcaactccttctctcaacaaatcattcaatcttggat |
185 |
Q |
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|||||||||||||| ||| |||||||||||||||| |||||| | |||||||| |||||||||| |||||||| |
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| T |
2184273 |
acctccaactggaaatcccactggtgcaggtcttgctctcaaccctctctctcaaaaaatcattcactcttggat |
2184347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 654 - 717
Target Start/End: Original strand, 2184514 - 2184577
Alignment:
| Q |
654 |
aatcttgaacagaacctggtgactgatagtgagaagaaggctaataggacattgacaagagatg |
717 |
Q |
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| T |
2184514 |
aatcttgaatagaaccaggttactgatagtgagaagaaggtgaattggacattgataagagatg |
2184577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 442 - 585
Target Start/End: Original strand, 12395508 - 12395652
Alignment:
| Q |
442 |
ttaattcatatacttcgtcagtgtaaagaacttttacattttcaatcaatcataaccgtcaaatcattagaataatttaatttttatcaaaatcactact |
541 |
Q |
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||||||||||||| ||||||||||||| ||||||| | |||||||||||||||| ||||| |||| || |||| |||||||||| |||||| | |
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| T |
12395508 |
ttaattcatatacactgtcagtgtaaagagattttacagtgtcaatcaatcataaccatcaaaaaattaaaaaaatt--atttttatcataatcaccttt |
12395605 |
T |
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| Q |
542 |
aaagtaacataca---tgattggttgtgttgggttgacagtgtaaaa |
585 |
Q |
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| T |
12395606 |
aaagtcacacacatagtaattggttgtgatgtgctgacagtgtaaaa |
12395652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 442 - 513
Target Start/End: Original strand, 3259625 - 3259696
Alignment:
| Q |
442 |
ttaattcatatacttcgtcagtgtaaagaacttttacattttcaatcaatcataaccgtcaaatcattagaa |
513 |
Q |
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||||||||||||| | | |||||||||| |||||||| |||||||||||||| || |||||| ||||||| |
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| T |
3259625 |
ttaattcatatacaccattagtgtaaagagcttttacactttcaatcaatcattactatcaaattattagaa |
3259696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 462 - 504
Target Start/End: Original strand, 29649377 - 29649419
Alignment:
| Q |
462 |
gtgtaaagaacttttacattttcaatcaatcataaccgtcaaa |
504 |
Q |
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| T |
29649377 |
gtgtaaagaatttttacattttcaattaatcataaccatcaaa |
29649419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 473 - 514
Target Start/End: Complemental strand, 11786308 - 11786267
Alignment:
| Q |
473 |
ttttacattttcaatcaatcataaccgtcaaatcattagaat |
514 |
Q |
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| T |
11786308 |
ttttacattctcaatcaatcataactgtcaaatcattcgaat |
11786267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 473 - 583
Target Start/End: Original strand, 1132144 - 1132254
Alignment:
| Q |
473 |
ttttacattttcaatcaatcataaccgtcaaatcattagaataatttaatttttatcaaaatcactactaaagtaacatacatgattggttgtgttgggt |
572 |
Q |
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|||||||| |||||||||||||||||||| |||||||||| |||| | |||||||| || | | |||||| ||| |||||| |||||||| || || |
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| T |
1132144 |
ttttacatcgtcaatcaatcataaccgtcagatcattagaaacatttgacttttatcataactaattctaaagacacacacatgactggttgtgatgtgt |
1132243 |
T |
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| Q |
573 |
tgacagtgtaa |
583 |
Q |
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|||| ||||| |
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| T |
1132244 |
agacaatgtaa |
1132254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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