View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3863_high_58 (Length: 237)
Name: NF3863_high_58
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3863_high_58 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 5390946 - 5391168
Alignment:
| Q |
1 |
cctcaaatccataatcatcgatctcaaaccgttctgctaacaccttccacaaatgtttccacctgaaaacatcgccattgctgcagttgaatgcttcatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5390946 |
cctcaaatccataatcatcgatctcaaaccgttctgctaacaccttccacaaatgtttccacctgaaaacatcgccattgctgcagttgaatgcttcatt |
5391045 |
T |
|
| Q |
101 |
ctttgcattaggatccactgcaccccaaatatgttgttcggatattaaattagcatctgaagctgttgaataacattcccatgcagcttttgagccagga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5391046 |
ctttgcattaggatccactgcaccccaaatatgttgttcggatattaaattagcatctgaagctgttgaataacattcccatgcaccttttgagccagga |
5391145 |
T |
|
| Q |
201 |
aaccttaatggaagaccctcatg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
5391146 |
aaccttaatggaagaccctcatg |
5391168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 5399665 - 5399887
Alignment:
| Q |
1 |
cctcaaatccataatcatcgatctcaaaccgttctgctaacaccttccacaaatgtttccacctgaaaacatcgccattgctgcagttgaatgcttcatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5399665 |
cctcaaatccataatcatcgatctcaaaccgttctgctaacaccttccacaaatgtttccacctgaaaacatcgccattgctgcagttgaatgcttcatt |
5399764 |
T |
|
| Q |
101 |
ctttgcattaggatccactgcaccccaaatatgttgttcggatattaaattagcatctgaagctgttgaataacattcccatgcagcttttgagccagga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5399765 |
ctttgcattaggatccactgcaccccaaatatgttgttcggatattaaattagcatctgaagctgttgaataacattcccatgcaccttttgagccagga |
5399864 |
T |
|
| Q |
201 |
aaccttaatggaagaccctcatg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
5399865 |
aaccttaatggaagaccctcatg |
5399887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 5394484 - 5394706
Alignment:
| Q |
1 |
cctcaaatccataatcatcgatctcaaaccgttctgctaacaccttccacaaatgtttccacctgaaaacatcgccattgctgcagttgaatgcttcatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||| |||||||||||||| |
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| T |
5394484 |
cctcaaatccataatcatcgatctcaaaccgttctgctaacaccttccacaaatgtttccacttgaaaacatcaccattactgcaattgaatgcttcatt |
5394583 |
T |
|
| Q |
101 |
ctttgcattaggatccactgcaccccaaatatgttgttcggatattaaattagcatctgaagctgttgaataacattcccatgcagcttttgagccagga |
200 |
Q |
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|||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| || |||||||| ||||||||| |||||||||||||| |
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| T |
5394584 |
ctttgcgttaggatccgctgcaccccaaatatgttgttcggctattaaattagcatctgaagcagtagaataacactcccatgcaccttttgagccagga |
5394683 |
T |
|
| Q |
201 |
aaccttaatggaagaccctcatg |
223 |
Q |
| |
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|||||||| |||||||||||||| |
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| T |
5394684 |
aaccttaaaggaagaccctcatg |
5394706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 139
Target Start/End: Original strand, 3818850 - 3818947
Alignment:
| Q |
42 |
accttccacaaatgtttccacctgaaaacatcgccattgctgcagttgaatgcttcattctttgcattaggatccactgcaccccaaatatgttgttc |
139 |
Q |
| |
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||||||||||| || |||||||| |||||||| ||||| || || ||||||||||||||||| |||| ||||||||||||| |||||||||||||||| |
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| T |
3818850 |
accttccacaattgcttccacctaaaaacatcaccattactacaattgaatgcttcattcttagcataaggatccactgcagcccaaatatgttgttc |
3818947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 42 - 136
Target Start/End: Complemental strand, 47339027 - 47338933
Alignment:
| Q |
42 |
accttccacaaatgtttccacctgaaaacatcgccattgctgcagttgaatgcttcattctttgcattaggatccactgcaccccaaatatgttg |
136 |
Q |
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||||||||||| || |||||||| |||||||| ||||| || || ||||||||||||||||| |||| ||||||||||||| ||||||||||||| |
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| T |
47339027 |
accttccacaattgcttccacctaaaaacatcaccattactacaattgaatgcttcattcttagcataaggatccactgcagcccaaatatgttg |
47338933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 42 - 136
Target Start/End: Complemental strand, 47350036 - 47349942
Alignment:
| Q |
42 |
accttccacaaatgtttccacctgaaaacatcgccattgctgcagttgaatgcttcattctttgcattaggatccactgcaccccaaatatgttg |
136 |
Q |
| |
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||||||||||| ||||||||||| |||||||| |||||||| || ||||| ||||||||||| |||| || |||||||||| ||||||| ||||| |
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| T |
47350036 |
accttccacaattgtttccacctaaaaacatcaccattgctacaattgaacgcttcattcttagcataagtatccactgcagcccaaatgtgttg |
47349942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 136
Target Start/End: Complemental strand, 47347536 - 47347403
Alignment:
| Q |
3 |
tcaaatccataatcatcgatctcaaaccgttctgctaacaccttccacaaatgtttccacctgaaaacatcgccattgctgcagttgaatgcttcattct |
102 |
Q |
| |
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||||| ||||| || || ||| ||||| |||| || || |||||||| | |||||||| || |||||||| |||||||| ||||| || ||||| |||| |
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| T |
47347536 |
tcaaacccatactcctcaatcccaaactgttccgccaaaaccttccatagttgtttccatctaaaaacatcaccattgctacagttaaaagcttcgttct |
47347437 |
T |
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| Q |
103 |
ttgcattaggatccactgcaccccaaatatgttg |
136 |
Q |
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| |||| |||||||||||| ||||||||||||| |
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| T |
47347436 |
tagcataaggatccactgcggcccaaatatgttg |
47347403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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