View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3863_high_59 (Length: 237)
Name: NF3863_high_59
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3863_high_59 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 31524651 - 31524431
Alignment:
| Q |
1 |
tgacctgtttctgactcagcttgtctcaccaagggtccaactgcaaatacaggaactttcaataaacttgataattctccatcttcatcattcagtgctt |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
31524651 |
tgacctatttctgactcagcttgtctcaccaggggtccaactgcaaacacaggaactttcaataaacttgatagttctccatctccatcattcagtgctt |
31524552 |
T |
|
| Q |
101 |
taagctctctatgttgaagttcatcccacgtgttaactaagatggcatcgcttttggaaaagtttttcgctacggctaagtactctttatactccaagtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31524551 |
taagctctctatgttgaagttcatcccacgtgttaactaagatggcatcgcttttggagaagtttttcgctacggttaagtactctttatactccaagtt |
31524452 |
T |
|
| Q |
201 |
gtaccggtccagcattggatc |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
31524451 |
gtaccggtccagcattggatc |
31524431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University