View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3863_high_60 (Length: 235)
Name: NF3863_high_60
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3863_high_60 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 28094999 - 28094787
Alignment:
| Q |
21 |
gtaataagagaatggaagataaaaaagtaattagagtcatatttataccaagaattacatgatgcaaagccattactctaccaattacttaatagatatt |
120 |
Q |
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| T |
28094999 |
gtaataagagaatggaagataaaa--gtaattagagtcatatttataccaagaattacatgatgcaaagccattattctaccaattacttaatagatatt |
28094902 |
T |
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| Q |
121 |
aatttcaaacatctcataattacaaaacaagataattactctgccgctggcacaaacatgagacatatcacaagagaataaggaatcaagagacggaaaa |
220 |
Q |
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| T |
28094901 |
aatttcaaacatctcataattacaaaacaagataattactctgccgctggcacaaacatgagacatatcacaagagaataaggaatcaagagacggaaaa |
28094802 |
T |
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| Q |
221 |
aacccaacgtatgcc |
235 |
Q |
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| T |
28094801 |
aacccaacgtatgcc |
28094787 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 111 - 165
Target Start/End: Complemental strand, 7035669 - 7035615
Alignment:
| Q |
111 |
aatagatattaatttcaaacatctcataattacaaaacaagataattactctgcc |
165 |
Q |
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|||||||||| ||||||||||||||| |||| ||||||||||||| |||| |||| |
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| T |
7035669 |
aatagatattgatttcaaacatctcacaattccaaaacaagataactactatgcc |
7035615 |
T |
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