View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3863_high_7 (Length: 583)
Name: NF3863_high_7
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3863_high_7 |
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| [»] scaffold1395 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 14 - 510
Target Start/End: Original strand, 43334783 - 43335279
Alignment:
| Q |
14 |
gagaagttgttatttgagaggtccaaaatttctaggtcaaacaaatcagcaaaactactaggaatagatccactaaagtgattgctgctgagattcaatg |
113 |
Q |
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|||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
43334783 |
gagaagctgttatttgagaggtccaaaatttctaggttaaccaaatcagcaaaactactaggaatagctccactaaactgattgctgctgagattcaatg |
43334882 |
T |
|
| Q |
114 |
caatctgtagactcaaaggcatttttggaatatcaccacttaacttattttctccaagttggacttccataagatttcccaagtttccaatgggcgacgg |
213 |
Q |
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||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
43334883 |
caatctgtagattcaaaggcatttttggaatatccccacttaacttattttctccaagttggacttccataagttttcccaagtttccaatggacgacgg |
43334982 |
T |
|
| Q |
214 |
tatagacccgttgagattgttcccttgcaagtcaagaagtacaaggctgtttgacatatcagatggaatcggtccatgcagagaattctggctcaaattc |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
43334983 |
tatagacccgttgagattgttcccttgcaagtcaagaagtacaaggctgtttgacatctcagatggaattggtccatgcagagaattcaggctcaaattc |
43335082 |
T |
|
| Q |
314 |
aaggtagacaactttttcagttgtgaaatttgaattggaatagtaccattaagtttgttcatttgaagcttcaagacttgaagattgctaagattaccaa |
413 |
Q |
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| ||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||| || | |||||||||||||||||||||||||| |
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| T |
43335083 |
agggtagacaactgttgcagttgtgaaatttgaattggaatagtaccattaagcttgttcatttgaagtttaaggacttgaagattgctaagattaccaa |
43335182 |
T |
|
| Q |
414 |
gttctggaggcaatgctccactcaattggttctcagccaaattcaacaaggccaattccctacaagaacctaattcaggaggtatcaaaccggtcaa |
510 |
Q |
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||||||| |||||||| ||| |||||||||| ||||||||||||||||||||||||| | ||||||||| |||| |||||||||| ||||| ||||| |
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| T |
43335183 |
gttctggtggcaatgcaccagtcaattggttatcagccaaattcaacaaggccaatttcttacaagaacttaatccaggaggtattaaacctgtcaa |
43335279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 14 - 510
Target Start/End: Original strand, 43339218 - 43339714
Alignment:
| Q |
14 |
gagaagttgttatttgagaggtccaaaatttctaggtcaaacaaatcagcaaaactactaggaatagatccactaaagtgattgctgctgagattcaatg |
113 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
43339218 |
gagaagctgttatttgagaggtccaaaatttctaggttaaccaaatcagcaaaactactaggaatagctccactaaactgattgctgctgagattcaatg |
43339317 |
T |
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| Q |
114 |
caatctgtagactcaaaggcatttttggaatatcaccacttaacttattttctccaagttggacttccataagatttcccaagtttccaatgggcgacgg |
213 |
Q |
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||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
43339318 |
caatctgtagattcaaaggcatttttggaatatccccacttaacttattttctccaagttggacttccataagttttcccaagtttccaatggacgacgg |
43339417 |
T |
|
| Q |
214 |
tatagacccgttgagattgttcccttgcaagtcaagaagtacaaggctgtttgacatatcagatggaatcggtccatgcagagaattctggctcaaattc |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
43339418 |
tatagacccgttgagattgttcccttgcaagtcaagaagtacaaggctgtttgacatctcagatggaattggtccatgcagagaattcaggctcaaattc |
43339517 |
T |
|
| Q |
314 |
aaggtagacaactttttcagttgtgaaatttgaattggaatagtaccattaagtttgttcatttgaagcttcaagacttgaagattgctaagattaccaa |
413 |
Q |
| |
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| ||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||| || | |||||||||||||||||||||||||| |
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| T |
43339518 |
agggtagacaactgttgcagttgtgaaatttgaattggaatagtaccattaagcttgttcatttgaagtttaaggacttgaagattgctaagattaccaa |
43339617 |
T |
|
| Q |
414 |
gttctggaggcaatgctccactcaattggttctcagccaaattcaacaaggccaattccctacaagaacctaattcaggaggtatcaaaccggtcaa |
510 |
Q |
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||||||| |||||||| ||| |||||||||| ||||||||||||||||||||||||| | ||||||||| |||| |||||||||| ||||| ||||| |
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| T |
43339618 |
gttctggtggcaatgcaccagtcaattggttatcagccaaattcaacaaggccaatttcttacaagaacttaatccaggaggtattaaacctgtcaa |
43339714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1395 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: scaffold1395
Description:
Target: scaffold1395; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 14 - 510
Target Start/End: Original strand, 587 - 1083
Alignment:
| Q |
14 |
gagaagttgttatttgagaggtccaaaatttctaggtcaaacaaatcagcaaaactactaggaatagatccactaaagtgattgctgctgagattcaatg |
113 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
587 |
gagaagctgttatttgagaggtccaaaatttctaggttaaccaaatcagcaaaactactaggaatagctccactaaactgattgctgctgagattcaatg |
686 |
T |
|
| Q |
114 |
caatctgtagactcaaaggcatttttggaatatcaccacttaacttattttctccaagttggacttccataagatttcccaagtttccaatgggcgacgg |
213 |
Q |
| |
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||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| | |
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| T |
687 |
caatctgtagattcaaaggcatttttggaatatccccacttaacttattttctccaagttggacttccataagttttcccaagtttccaatggacgacag |
786 |
T |
|
| Q |
214 |
tatagacccgttgagattgttcccttgcaagtcaagaagtacaaggctgtttgacatatcagatggaatcggtccatgcagagaattctggctcaaattc |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
787 |
tatagacccgttgagattgttcccttgcaagtcaagaagtacaaggctgtttgacatctcagatggaattggtccatgcagagaattcaggctcaaattc |
886 |
T |
|
| Q |
314 |
aaggtagacaactttttcagttgtgaaatttgaattggaatagtaccattaagtttgttcatttgaagcttcaagacttgaagattgctaagattaccaa |
413 |
Q |
| |
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| ||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||| || | |||||||||||||||||||||||||| |
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| T |
887 |
agggtagacaactgttgcagttgtgaaatttgaattggaatagtaccattaagcttgttcatttgaagtttaaggacttgaagattgctaagattaccaa |
986 |
T |
|
| Q |
414 |
gttctggaggcaatgctccactcaattggttctcagccaaattcaacaaggccaattccctacaagaacctaattcaggaggtatcaaaccggtcaa |
510 |
Q |
| |
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||||||| |||||||| ||| |||||||||| ||||||||||||||||||||||||| | ||||||||| |||| |||||||||| ||||| ||||| |
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| T |
987 |
gttctggtggcaatgcaccagtcaattggttatcagccaaattcaacaaggccaatttcttacaagaacttaatccaggaggtattaaacctgtcaa |
1083 |
T |
|
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