View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3863_high_8 (Length: 536)
Name: NF3863_high_8
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3863_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 13 - 500
Target Start/End: Original strand, 15591315 - 15591806
Alignment:
| Q |
13 |
aatatgattcctaatgccgagaaattcatcagagag-ccagttgtatagaagagggcgttgatctctcaaactaaatgatacatcagtttctacaaggag |
111 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15591315 |
aatatgattcctaatgtcgagaaattcatcagagagtccagttgtagagaagagggcgttgatctctcaaactaaatgatacatcagtttctacaaggag |
15591414 |
T |
|
| Q |
112 |
agctgatgatgattctatgcaaaatcttagccagatcagcaactcctttgagaaaactttgggccttatccatcagctttaccaccttaccgtctccacc |
211 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15591415 |
--ctgatgatgattctacgcaaaatctgagccagatcagcaactcctttgagaaaacgttcggccttatccatcagctttaccaccttaccgtctccacc |
15591512 |
T |
|
| Q |
212 |
ttgaacgttgtcttttaaatgtcactgcatttt--ttataggtctttgtcttaacggtgatgatcaaaataccctgcactttcataatgactagcaaagc |
309 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
15591513 |
ttgaacgttgtctttcaaatgtcactgcattttttttataggtctttgtcttaacggtgatgatcagaataccctgcactttcatgatgactagcaaagc |
15591612 |
T |
|
| Q |
310 |
aatttcatctctgtcagctatggtatggtacgaatcaaacagaagatcgtcaaagttgatgtggtaacgtacatcgttgtcgttgatagtctatgcaaag |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15591613 |
aatttcatctctgtcagctatggtatggtacgaatcaaacagaagatcgtcaaagttgatgtggtaacgtacatcgctgtcgttgatagtctatgcaaag |
15591712 |
T |
|
| Q |
410 |
ataaatctgtaaatcatctgtgtgatgaattagtttttattatttac---tatgttcaacttgatattgtaactataaaagtggttgattttta |
500 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15591713 |
ataaatttgtaaatcatctgtgagatgaattagtttttattatttactattatgttcaacttgatattgtaactataaaagtggttgattttta |
15591806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 499
Target Start/End: Original strand, 14651913 - 14651952
Alignment:
| Q |
460 |
gttcaacttgatattgtaactataaaagtggttgattttt |
499 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
14651913 |
gttcaatttgatagtgtaactataaaagtggttgattttt |
14651952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 499
Target Start/End: Original strand, 14661704 - 14661743
Alignment:
| Q |
460 |
gttcaacttgatattgtaactataaaagtggttgattttt |
499 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
14661704 |
gttcaatttgatagtgtaactataaaagtggttgattttt |
14661743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 118 - 189
Target Start/End: Complemental strand, 35445739 - 35445668
Alignment:
| Q |
118 |
tgatgattctatgcaaaatcttagccagatcagcaactcctttgagaaaactttgggccttatccatcagct |
189 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||| ||||||||||| |
|
|
| T |
35445739 |
tgatgattctatgcaaaaccttagccagatcagcaactccattgagaaaaccctgggcctcatccatcagct |
35445668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University