View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3863_low_1 (Length: 852)
Name: NF3863_low_1
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3863_low_1 |
 | |
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| [»] scaffold0054 (5 HSPs) |
| | |
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| [»] scaffold1019 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 660; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 660; E-Value: 0
Query Start/End: Original strand, 36 - 829
Target Start/End: Original strand, 24415238 - 24416031
Alignment:
| Q |
36 |
tcataggctagtaccaaaatgaaaacgggaaatgcatcaaaaataaataagtataataatactaccttggaagatgaaaaaaggctcataataagaaagt |
135 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
24415238 |
tcataggctagtaccaaaatgataacgggaaatgcatcaaaaataaataagtataataatactaccttggaagatgaaaaaagggtcataataagaaagt |
24415337 |
T |
|
| Q |
136 |
gacagttttagttttggtttgtttccaatttactattttgcttttagatatcatggtttaccaatctattatcgattctcacctctactgttcttcttat |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
24415338 |
gacagttttagttttggtttgtttccaatttactattttgcttttacatatcatggtttaccaatctattatcgattctcacctctattgttcttcttat |
24415437 |
T |
|
| Q |
236 |
gacgaatataatctaatcctcatagacaaatttggtactagcgtgtgatttctaccagttttctacatggagacattatatataattgatactcaactgt |
335 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24415438 |
gaagaatataatctaatcctcatagacaaatttggtactagcgcgcgatttctaccagttttctacatggagacattatatataattgatactcaactgt |
24415537 |
T |
|
| Q |
336 |
tctttaaccattgtacgtagtttgctcttcttacttgtacctaacttacatgttcaagggtctgagagtgaatagaacnnnnnnnatacgatgttgcata |
435 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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|
| T |
24415538 |
tctttaaccattgtacgtagtttggtcttcttacttgtacctaacttacatgttcaagggtctgagagtgaatagaactttttttatatgatgttgcata |
24415637 |
T |
|
| Q |
436 |
ttatttgttgtacacaaatttttctcattagttctctaacatctacatgtatcttttttgtactggtattcttttgcaagaacagttgcttgttgaagaa |
535 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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|
| T |
24415638 |
ttatttgttgtacacaaatttttctcattagttctctaacatctacctgtatcttttttgtactaatattcttttgcaagaacagttgcttgctgaagaa |
24415737 |
T |
|
| Q |
536 |
gttatccctcatttgatcactagtgatactaatgctctgatgaccatgcttccttcccatcaagagatcaaagctgcagtttttcccctcaacaaagaaa |
635 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24415738 |
gttatccctcatttgatcactagtgatactaatgctctgatgaccatgcttccttcccatcaagagatcaaagctgcagtttttcccctcaacaaagaaa |
24415837 |
T |
|
| Q |
636 |
gtgctcctggtcccgatggatttggagctttcttttatcaaactttctgcgatattgtc-------acgtgattaaagaagtcttagattttttcacaac |
728 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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|
| T |
24415838 |
gtgctcctggtcccgatggatttggagctttcttttatcaaactttctgcgatattgtcaaagattacgtgattaa-------ttagattttttcacaac |
24415930 |
T |
|
| Q |
729 |
tggatggattttaccattattatagttttaacactaatataatcggttttctcaaataaatttcaaaagctatctccattgatcaatattcaaggattgt |
828 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
24415931 |
tggatggattttacaattattatagttttaacgctaatataatcggttttctcacataaatttcaaaagctatctccattgatcaatattctaggattgt |
24416030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 487 - 633
Target Start/End: Original strand, 29154852 - 29154996
Alignment:
| Q |
487 |
tcttttttgtactggtattcttttgcaagaacagttgcttgttgaagaagttatccctcatttgatcactagtgatactaatgctctgatgaccatgctt |
586 |
Q |
| |
|
|||||||||||||| ||||| ||| || ||||||||||||| |||||||||||||||||||||||| ||| |||||| |||| | ||||||||||| |
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|
| T |
29154852 |
tcttttttgtactgatattcatttacaggaacagttgcttgctgaagaagttatccctcatttgatgactggtgatataaatg--ttactgaccatgctt |
29154949 |
T |
|
| Q |
587 |
ccttcccatcaagagatcaaagctgcagtttttcccctcaacaaaga |
633 |
Q |
| |
|
|| ||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
29154950 |
ccacaccatcaacagatcaaagctgcagtttttgtcctcaacaaaga |
29154996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 486 - 563
Target Start/End: Original strand, 29146193 - 29146270
Alignment:
| Q |
486 |
atcttttttgtactggtattcttttgcaagaacagttgcttgttgaagaagttatccctcatttgatcactagtgata |
563 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
29146193 |
atcttttttgtactaatattcttttgcaggaacagttgcttgctgaagaagttatccctcatttgatcactagtgata |
29146270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 224 - 333
Target Start/End: Complemental strand, 32958346 - 32958241
Alignment:
| Q |
224 |
tgttcttcttatgacgaatataatctaatcctcatagacaaatttggtactagcgtgtgatttctaccagttttctacatggagacattatatataattg |
323 |
Q |
| |
|
||||||||||| |||||| ||||||||| || ||| |||||||||||||||| |||||||||||||| | |||| || ||||| | || |||||||| |
|
|
| T |
32958346 |
tgttcttcttacgacgaagataatctaagccccattgacaaatttggtactaacgtgtgatttctacaacttttttaaatggaaaaat----tataattg |
32958251 |
T |
|
| Q |
324 |
atactcaact |
333 |
Q |
| |
|
|||||||||| |
|
|
| T |
32958250 |
atactcaact |
32958241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 429 - 494
Target Start/End: Original strand, 29146107 - 29146170
Alignment:
| Q |
429 |
ttgcatattatttgttgtacacaaatttttctcattagttctctaacatctacatgtatctttttt |
494 |
Q |
| |
|
||||||||||||| ||||||| ||| ||||||||| || ||||||||||||||||| ||||||| |
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|
| T |
29146107 |
ttgcatattatttattgtacaaaaaaatttctcatt--ttttctaacatctacatgtagctttttt |
29146170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 94; Significance: 2e-45; HSPs: 5)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 197 - 346
Target Start/End: Original strand, 42830 - 42978
Alignment:
| Q |
197 |
caatctattatcgattctcacctctactgttcttcttatgacgaatataatctaatcctcatagacaaatttggtactagcgtgtgatttctaccagttt |
296 |
Q |
| |
|
|||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
42830 |
caatctattatcaattctcactgctacttttcttcttatgacgaatataatctaatccacatagacaaatttggtattagcgtgtgatttctaccagttt |
42929 |
T |
|
| Q |
297 |
tctacatggagacattatatataattgatactcaactgttctttaaccat |
346 |
Q |
| |
|
|||| | ||||| || || ||| ||||||||| ||||||||||||||||| |
|
|
| T |
42930 |
tctaaaaggagaaatcatgtat-attgatacttaactgttctttaaccat |
42978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 344 - 495
Target Start/End: Original strand, 43088 - 43236
Alignment:
| Q |
344 |
cattgtacgtagtttgctcttcttacttgtacctaacttacatgttcaagggtctgagagtgaatagaacnnnnnnnatacgatgttgcatattatttgt |
443 |
Q |
| |
|
||||||||||| |||| ||||||||||| ||||||||||||||||||| ||||||||| |||||||||| ||| |||| ||||||||||| | |
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|
| T |
43088 |
cattgtacgtattttgatcttcttacttatacctaacttacatgttcatgggtctgag--tgaatagaactttttttatatgatgctgcatattatta-t |
43184 |
T |
|
| Q |
444 |
tgtacacaaatttttctcattagttctctaacatctacatgtatcttttttg |
495 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43185 |
tgtacacaaatttttctcattagttctctaacacctacatgtatcttttttg |
43236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #3
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 42480 - 42546
Alignment:
| Q |
37 |
cataggctagtaccaaaatgaaaacgggaaatgcatcaaaaataaataagtataataatactaccttg |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
42480 |
cataggctagtaccaaaatgaaaacgggaaatgcat-aaaaataaataagtataatactactaccttg |
42546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 631 - 684
Target Start/End: Original strand, 43284 - 43337
Alignment:
| Q |
631 |
agaaagtgctcctggtcccgatggatttggagctttcttttatcaaactttctg |
684 |
Q |
| |
|
||||||| |||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
43284 |
agaaagttctcctggtcctggtggatttggagctttcttttatcaaactttctg |
43337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 169
Target Start/End: Original strand, 38163 - 38206
Alignment:
| Q |
126 |
ataagaaagtgacagttttagttttggtttgtttccaatttact |
169 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
38163 |
ataagaaagtgacagttttaatttgtgtttgtttccaatttact |
38206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 575 - 671
Target Start/End: Complemental strand, 32249795 - 32249699
Alignment:
| Q |
575 |
atgaccatgcttccttcccatcaagagatcaaagctgcagtttttcccctcaacaaagaaagtgctcctggtcccgatggatttggagctttctttt |
671 |
Q |
| |
|
||||||||||| || || ||||| || |||||||| ||||||||| |||||||||| || |||||||| ||||| ||||| ||||| || ||||||| |
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|
| T |
32249795 |
atgaccatgctaccatctcatcaggaaatcaaagcagcagtttttgccctcaacaaggatagtgctccaggtccagatggctttggggcattctttt |
32249699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1019 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1019
Description:
Target: scaffold1019; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 587 - 693
Target Start/End: Complemental strand, 1265 - 1159
Alignment:
| Q |
587 |
ccttcccatcaagagatcaaagctgcagtttttcccctcaacaaagaaagtgctcctggtcccgatggatttggagctttcttttatcaaactttctgcg |
686 |
Q |
| |
|
||||| || |||||||| |||||||| ||||| |||||||||| || ||||| ||| |||| ||||| | |||||||||||||| |||| || ||| | |
|
|
| T |
1265 |
ccttcacaccaagagataaaagctgctatttttgccctcaacaaggacagtgcccctagtcctgatggttatggagctttcttttttcaacattactggg |
1166 |
T |
|
| Q |
687 |
atattgt |
693 |
Q |
| |
|
||||||| |
|
|
| T |
1165 |
atattgt |
1159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 626 - 691
Target Start/End: Original strand, 11982581 - 11982646
Alignment:
| Q |
626 |
aacaaagaaagtgctcctggtcccgatggatttggagctttcttttatcaaactttctgcgatatt |
691 |
Q |
| |
|
|||||||||||||| || ||||| |||||||||||||| | |||||||||||||| || |||||| |
|
|
| T |
11982581 |
aacaaagaaagtgccccaggtcctgatggatttggagcacttttttatcaaactttttgggatatt |
11982646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 486 - 545
Target Start/End: Complemental strand, 15802398 - 15802339
Alignment:
| Q |
486 |
atcttttttgtactggtattcttttgcaagaacagttgcttgttgaagaagttatccctc |
545 |
Q |
| |
|
|||||||||||||| | ||||||||| |||||||| |||||||||||||| ||||||| |
|
|
| T |
15802398 |
atcttttttgtactaacagtcttttgcaggaacagttacttgttgaagaagtcatccctc |
15802339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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