View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3863_low_10 (Length: 493)

Name: NF3863_low_10
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3863_low_10
NF3863_low_10
[»] chr7 (2 HSPs)
chr7 (20-477)||(2230347-2230803)
chr7 (267-392)||(18227758-18227881)
[»] chr2 (3 HSPs)
chr2 (271-399)||(13961286-13961414)
chr2 (260-363)||(14871722-14871825)
chr2 (266-363)||(30220696-30220791)
[»] chr4 (2 HSPs)
chr4 (308-394)||(8457747-8457833)
chr4 (270-338)||(36158155-36158223)
[»] chr5 (3 HSPs)
chr5 (308-392)||(42225700-42225786)
chr5 (311-394)||(17247705-17247786)
chr5 (317-363)||(21210902-21210948)
[»] chr3 (2 HSPs)
chr3 (317-363)||(34456874-34456920)
chr3 (317-361)||(20221569-20221613)
[»] chr8 (1 HSPs)
chr8 (266-363)||(1248335-1248432)
[»] chr1 (1 HSPs)
chr1 (268-340)||(41062181-41062252)


Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 20 - 477
Target Start/End: Complemental strand, 2230803 - 2230347
Alignment:
Q  20 gaaacgaacacgttaatgtctgcctttttgtgttgacaaaatgttaatttcagccttaatgatagtaaattaatacgaatatcgagttttcnnnnnnnnn 119  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||  || |||||             
T  2230803 gaaacgaacacgttaatgtctgcctatttgtgttgacaaaatgttaatgtcagccttaatgatagtaaattaatacgaatactgaattttcaacaaaaaa 2230704  T
Q  120 ---tgaatacaaattatatttatgtttggtaaaaaacgatatttatatcaagataaaaatgcaaagataatgttaggtcagtattttataatattagaaa 216  Q
       | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2230703 atataaatacaaattatatttatgtttggtaaaaaacgatatttatatcaagataaaaatgcaaagataatgttacgtcagtattttataatattagaaa 2230604  T
Q  217 tgtgaatttgaagtcaaatatccaaatctgattgcccttatttatagatgtatgttatttgaataattattttttgaacaacttatatgttaaccaaata 316  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||    
T  2230603 tgtgaatttgaagtcaaatatccatatctgattgcccttatttatagatgtatgttatttgaataatcattttttgaacaacttatatgataatcaaata 2230504  T
Q  317 tatacaaagaaatgtaggtattggtacgaaaattaaagcaatagagattgagtaaaaacacaataagagtatgagataattgttttcaaattgtcacaat 416  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||      
T  2230503 tatacaaagaaatgtaggtattgttacgaaaattaaagcaatagagattgagtaaaaacataataagagcatgagataattgttttcaaattgtcaca-- 2230406  T
Q  417 acaaatattatttctctatttatatgagttatttgtcaccggaaaaaatttgtgtatatat 477  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2230405 --aaatattatttctctatttatatgagttatttgtcaccggaaaaaatttgtgtgtatat 2230347  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 392
Target Start/End: Original strand, 18227758 - 18227881
Alignment:
Q  267 tatgttatttgaataattattttttgaacaacttatatgttaaccaaatatatacaaagaaatgtaggtattggtacgaaaattaaagcaatagagattg 366  Q
    ||||||||||||| | ||| |||| | ||||||||||    ||| ||| ||||| |||  |||||| ||||||  |||||||| ||| |||| ||||  |    
T  18227758 tatgttatttgaagagttaattttaggacaacttataaaacaactaaaaatataaaaaataatgtaagtattgacacgaaaatcaaaacaatggaga--g 18227855  T
Q  367 agtaaaaacacaataagagtatgaga 392  Q
    |||||||||| |||||||||||||||    
T  18227856 agtaaaaacataataagagtatgaga 18227881  T

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Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 271 - 399
Target Start/End: Original strand, 13961286 - 13961414
Alignment:
Q  271 ttatttgaataattattttttgaacaacttatatgttaaccaaatatatacaaagaaatgtaggtattggtacgaaaattaaagcaatagagattgagta 370  Q
    ||||||||| || |||||||| |||||||||||    ||| ||| ||||||||||||||| ||||||| | |||||||  ||| |||||||||   ||||    
T  13961286 ttatttgaacaactattttttaaacaacttataatacaactaaagatatacaaagaaatgaaggtattagcacgaaaagcaaaacaatagagagaaagta 13961385  T
Q  371 aaaacacaataagagtatgagataattgt 399  Q
    ||||||||||| |||||||||| ||||||    
T  13961386 aaaacacaatatgagtatgagagaattgt 13961414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 363
Target Start/End: Complemental strand, 14871825 - 14871722
Alignment:
Q  260 atagatgtatgttatttgaataattattttttgaacaacttatatgttaaccaaatatatacaaagaaatgtaggtattggtacgaaaattaaagcaata 359  Q
    ||||| |||||||||||||| || || |||||| |||||||||  |  ||| ||| ||||| ||||||||||| || |||  || ||||| |||||||||    
T  14871825 atagaggtatgttatttgaacaactactttttgtacaacttatgggacaactaaaaatatagaaagaaatgtatgtcttgacacaaaaatcaaagcaata 14871726  T
Q  360 gaga 363  Q
    ||||    
T  14871725 gaga 14871722  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 363
Target Start/End: Original strand, 30220696 - 30220791
Alignment:
Q  266 gtatgttatttgaataattattttttgaacaacttatatgttaaccaaatatatacaaagaaatgtaggtattggtacgaaaattaaagcaatagaga 363  Q
    ||||||||||||||  | ||||||| | |||||||||     |||| || |||||||||||||||||||||||||  | |||| ||||||||||||||    
T  30220696 gtatgttatttgaaccactatttttaggacaacttatggaacaacccaagatatacaaagaaatgtaggtattgg--caaaaactaaagcaatagaga 30220791  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 308 - 394
Target Start/End: Complemental strand, 8457833 - 8457747
Alignment:
Q  308 aaccaaatatatacaaagaaatgtaggtattggtacgaaaattaaagcaatagagattgagtaaaaacacaataagagtatgagata 394  Q
    |||||||  |||||||||||||||||| ||| | ||||||| || |||||||||||  |||||| ||||||||  ||||||||||||    
T  8457833 aaccaaaggtatacaaagaaatgtaggcattagcacgaaaactagagcaatagagagagagtaagaacacaatgtgagtatgagata 8457747  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 338
Target Start/End: Complemental strand, 36158223 - 36158155
Alignment:
Q  270 gttatttgaataattattttttgaacaacttatatgttaaccaaatatatacaaagaaatgtaggtatt 338  Q
    |||||||||| || ||||||||||  |||||||| |  ||||||||||||||||| ||| |||||||||    
T  36158223 gttatttgaacaactattttttgattaacttataagacaaccaaatatatacaaataaaggtaggtatt 36158155  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 308 - 392
Target Start/End: Original strand, 42225700 - 42225786
Alignment:
Q  308 aaccaaatatatacaaagaaatgtaggtattggtacgaaaattaaagcaatagagattg--agtaaaaacacaataagagtatgaga 392  Q
    ||||||| ||||||||||||||||||||| ||| |||||||  | |||||||||||  |  ||||| |||||||| |||||||||||    
T  42225700 aaccaaagatatacaaagaaatgtaggtagtggcacgaaaaccagagcaatagagagagaaagtaagaacacaatgagagtatgaga 42225786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 394
Target Start/End: Original strand, 17247705 - 17247786
Alignment:
Q  311 caaatatatacaaagaaatgtaggtattggtacgaaaattaaagcaatagagattgagtaaaaacacaataagagtatgagata 394  Q
    |||| ||||||||| |||||||| |||||  || |||||||||| ||||||||  |||||| || ||||| |||||||||||||    
T  17247705 caaagatatacaaataaatgtagatattgacacaaaaattaaagtaatagaga--gagtaagaatacaatgagagtatgagata 17247786  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 363
Target Start/End: Complemental strand, 21210948 - 21210902
Alignment:
Q  317 tatacaaagaaatgtaggtattggtacgaaaattaaagcaatagaga 363  Q
    ||||||||||||| |||||| | |||| |||||||||||||||||||    
T  21210948 tatacaaagaaatttaggtagtagtacaaaaattaaagcaatagaga 21210902  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 363
Target Start/End: Complemental strand, 34456920 - 34456874
Alignment:
Q  317 tatacaaagaaatgtaggtattggtacgaaaattaaagcaatagaga 363  Q
    ||||||||||||| |||||||||| || |||||||||||||||||||    
T  34456920 tatacaaagaaatttaggtattggcacaaaaattaaagcaatagaga 34456874  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 20221569 - 20221613
Alignment:
Q  317 tatacaaagaaatgtaggtattggtacgaaaattaaagcaataga 361  Q
    ||||||||||||||||||||||| ||| ||||| |||||| ||||    
T  20221569 tatacaaagaaatgtaggtattgatacaaaaatcaaagcattaga 20221613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 266 - 363
Target Start/End: Complemental strand, 1248432 - 1248335
Alignment:
Q  266 gtatgttatttgaataattattttttgaacaacttatatgttaaccaaatatatacaaagaaatgtaggtattggtacgaaaattaaagcaatagaga 363  Q
    |||||||||||||| || ||||||||| |||| ||||  |  || |||  ||||| ||||||||||| || || |||||||||| |||||||||||||    
T  1248432 gtatgttatttgaacaactattttttgtacaatttatgagacaaacaagaatatagaaagaaatgtatgtcttagtacgaaaatcaaagcaatagaga 1248335  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 340
Target Start/End: Complemental strand, 41062252 - 41062181
Alignment:
Q  268 atgttatttgaataattattttttgaacaacttatatgttaaccaaatatatacaaagaaatgtaggtattgg 340  Q
    |||||||||||| |||||||||||| | ||||| |  | |||||||| ||||||| |||||||||||||||||    
T  41062252 atgttatttgaacaattattttttggataacttcttggataaccaaa-atatacagagaaatgtaggtattgg 41062181  T

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