View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3863_low_11 (Length: 487)
Name: NF3863_low_11
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3863_low_11 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 208 - 335
Target Start/End: Complemental strand, 34365413 - 34365286
Alignment:
| Q |
208 |
acacctaaactatggcatgggaatcacgaatatttgatctacaagtgacgtgtttgggatagtttctggtgtaaaacgtcgaagcatacgatagctccat |
307 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34365413 |
acaccaaaactatggcatgggaatcacgaatatttgatctacaagtgacgtgtttgggatagtttctggtgtaaaaagtcgaagcatacgatagctccat |
34365314 |
T |
|
| Q |
308 |
ttctctttgtttaatacatacacgaaac |
335 |
Q |
| |
|
|||||||||| |||||||||||| |||| |
|
|
| T |
34365313 |
ttctctttgtataatacatacacaaaac |
34365286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 34365603 - 34365513
Alignment:
| Q |
18 |
attctttacttatgtgtggaattcaataatatgaaatgaaatcaagtaaagttgttacttcttagcatttccttcacgaaaagaaatcata |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34365603 |
attctttacttatgtgtggaattcaataatatgaaatgaaatcaagtaaagttgttacttcttagcatttccttcacgaaaagaaatcata |
34365513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 432 - 487
Target Start/End: Original strand, 9471715 - 9471770
Alignment:
| Q |
432 |
tcatcaaatcatcacctagtgatgagtcgatgaaccggatccgcttgtttcatctc |
487 |
Q |
| |
|
||||||| || ||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
9471715 |
tcatcaattcctcacctagtgatgggtcgatgaaccggatccgcttgtttcttctc |
9471770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University