View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3863_low_13 (Length: 476)
Name: NF3863_low_13
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3863_low_13 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 414; Significance: 0; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Complemental strand, 2675081 - 2674624
Alignment:
| Q |
1 |
tggacgcaccaccatcatcattgcgcaccgcttatcaaccatccaaaatgctgacatcattgcagttgtccaaaatggtaagatcatggaaacgggatct |
100 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2675081 |
tggacgcaccaccatcatcatcgctcaccgcttatcaaccatccaaaatgcagacatcattgcagttgtccaaaatggtaagatcatggaaacgggatct |
2674982 |
T |
|
| Q |
101 |
cacgaaagcctcatgcaaaatgaaaattctctttacacctccctcgttcgactccaacaaactagaaatgatcaaagtgatgacactccatctatcatga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2674981 |
cacgaaagcctcatgcaaaatgaaaattctctttacacctccctcgttcgtctccaacaaactagaaatgatcaaactgatgacactccatctatcatga |
2674882 |
T |
|
| Q |
201 |
atagaggtcacatgcaaaacacgagtagtcgtagactcgtaagtcgttctagcagctctttcaactcaatgacacatggtggtgatgatatccttaatta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2674881 |
atagaggtcacatgcaaaacacgagtagtcgtagactcgtaagtcgttctagcagctctttcaactcaatgacacatggtggtgatgatatccttaatta |
2674782 |
T |
|
| Q |
301 |
taacaatgttgttgaagatattgttaataatgttgttgtagttgatgatcacaataatcatgatagcataaataacacgaaaaaggagaaggtcaaggtt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
2674781 |
taacaatgttgttgaagatattgttaataatgttgttgtagttgatgatcgcaataatcataatagtataaataatacgaaaaaggagaaggtcaaggtt |
2674682 |
T |
|
| Q |
401 |
ccttcgtttcaaaggttgttggcaatgaatgtgcctgaatggaagcaagcatgtttgg |
458 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2674681 |
ccttcgtttcgaaggttgttggctatgaatgtgcctgaatggaagcaagcatgtttgg |
2674624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 458
Target Start/End: Complemental strand, 2571590 - 2571136
Alignment:
| Q |
1 |
tggacgcaccaccatcatcattgcgcaccgcttatcaaccatccaaaatgctgacatcattgcagttgtccaaaatggtaagatcatggaaacgggatct |
100 |
Q |
| |
|
|||||| |||||||||||||| || ||||||||||| |||||||||||||| ||||| ||||| || || ||||||||| | ||||||||| ||||||| |
|
|
| T |
2571590 |
tggacgaaccaccatcatcatcgctcaccgcttatctaccatccaaaatgcagacattattgcggtcgttcaaaatggtctggtcatggaaatgggatct |
2571491 |
T |
|
| Q |
101 |
cacgaaagcctcatgcaaaatgaaaattctctttacacctccctcgttcgactccaacaaactagaaatgatcaaagtgatgacactccatctatcatga |
200 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2571490 |
cacgatagcctcatgcaaaatgacaattctctttacacatcccttgttcgtctccaacaaactagaaatgaccaaagtgatgacactccatctatcatga |
2571391 |
T |
|
| Q |
201 |
atagaggtcacatgcaaaacacgagtagtcgtagactcgtaagtcgttctagcagctctttcaactcaatgacacatggtggtgatgatatccttaatta |
300 |
Q |
| |
|
|||||| ||||||| ||| |||||||||||||||||| || |||| |||| ||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
2571390 |
atagagatcacatggaaatcacgagtagtcgtagacttgtgagtcattct---agctctttcaactcaatgacacacggtggtgatgatatcgttaatta |
2571294 |
T |
|
| Q |
301 |
taacaatgttgttgaagatattgttaataatgttgttgtagttgatgatcacaataatcatgatagcataa--ataacacgaaaaaggagaaggtcaagg |
398 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| ||||| ||||| ||||||||||||| ||||| ||||| |||| | ||||| |||||| ||| ||| |
|
|
| T |
2571293 |
taacaatgatgttgaagatactgttaataatgatgttgcagttgttgatcacaataataatgat--cataagtataataagaaaagggagaatgtcgagg |
2571196 |
T |
|
| Q |
399 |
ttccttcgtttcaaaggttgttggcaatgaatgtgcctgaatggaagcaagcatgtttgg |
458 |
Q |
| |
|
|||| ||||||| |||||||||||| ||||||| ||| || ||||||||||||||||||| |
|
|
| T |
2571195 |
ttccatcgtttcgaaggttgttggccatgaatgggccagagtggaagcaagcatgtttgg |
2571136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 458
Target Start/End: Complemental strand, 2643232 - 2642787
Alignment:
| Q |
1 |
tggacgcaccaccatcatcattgcgcaccgcttatcaaccatccaaaatgctgacatcattgcagttgtccaaaatggtaagatcatggaaacgggatct |
100 |
Q |
| |
|
||||||||| ||||||||||| || || ||| |||| ||||||||||||||||||||||||||||| | |||||||| ||||| |||||||| ||| || |
|
|
| T |
2643232 |
tggacgcacaaccatcatcatcgctcatcgcctatccaccatccaaaatgctgacatcattgcagtgtttcaaaatggcaagataatggaaacaggaact |
2643133 |
T |
|
| Q |
101 |
cacgaaagcctcatgcaaaatgaaaattctctttacacctccctcgttcgactccaacaaactagaaatgatcaaagtgatgacactccatctatcatga |
200 |
Q |
| |
|
|| ||||||||| |||| |||||||||||||||||||||| |||||||| |||||||||||||||||||| |||| ||| ||| || |||||||||||| |
|
|
| T |
2643132 |
catgaaagcctcgcgcaagatgaaaattctctttacacctctctcgttcgtctccaacaaactagaaatgaccaaaatgaggaccctgcatctatcatga |
2643033 |
T |
|
| Q |
201 |
atagaggtcacatgcaaaacacgagtagtcgtagactcgtaagtcgttctagcagctctttcaactcaatgacacatggtggtgatgatatccttaatta |
300 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2643032 |
acagaggtcacatgcaaaacacgagtagtcgtagactcgtgagtcgttct---agctctttcaactcaatgacacatggtggtgatgatatc-------- |
2642944 |
T |
|
| Q |
301 |
taacaatgttgttgaagatattgttaataatgttgttgtagttgatgatcacaataatcatgatagcataaataacacgaaaaaggagaaggtcaaggtt |
400 |
Q |
| |
|
|| ||| ||||||| ||||||||||||||||| ||| ||| ||||||||| |||||| ||||| | |||||| | |||||| ||||||||||||||| |
|
|
| T |
2642943 |
-aataattttgttgacgatattgttaataatgtagttatagctgatgatcataataataatgatgataaaaataataagaaaaaagagaaggtcaaggtt |
2642845 |
T |
|
| Q |
401 |
ccttcgtttcaaaggttgttggcaatgaatgtgcctgaatggaagcaagcatgtttgg |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
2642844 |
tcttcgtttcaaaggttgttggcaatgaatgtgccagagtggaagcaagcatgtttgg |
2642787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 4 - 314
Target Start/End: Original strand, 2449213 - 2449520
Alignment:
| Q |
4 |
acgcaccaccatcatcattgcgcaccgcttatcaaccatccaaaatgctgacatcattgcagttgtccaaaatggtaagatcatggaaacgggatctcac |
103 |
Q |
| |
|
|||||||||||| ||||| || ||||||||||| |||||| || ||| || ||||||||| | || ||||||||||||||| ||||||| ||||||||| |
|
|
| T |
2449213 |
acgcaccaccattatcatcgctcaccgcttatccaccatcagaactgcagatatcattgcaatcgttcaaaatggtaagatcgtggaaacaggatctcac |
2449312 |
T |
|
| Q |
104 |
gaaagcctcatgcaaaatgaaaattctctttacacctccctcgttcgactccaacaaactagaaatgatcaaagtgatgacactccatctatcatgaata |
203 |
Q |
| |
|
|||||||| ||||||||||| | ||||||||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| |||||||||||| |
|
|
| T |
2449313 |
gaaagccttatgcaaaatgacagctctctttacacctccctcgttcgtcttcaacaaactagaaatgaccaaagtgaccacactccacctatcatgaata |
2449412 |
T |
|
| Q |
204 |
gaggtcacatgcaaaacacgagtagtcgtagactcgtaagtcgttctagcagctctttcaactcaatgacacatggtggtgatgatatccttaattataa |
303 |
Q |
| |
|
||| |||||| ||||||||| ||||| || |||||| ||||||||| ||||||||||||| ||||||||||||| ||| |||| || |||| | ||| |
|
|
| T |
2449413 |
gagatcacatccaaaacacgtgtagtgatacactcgtgagtcgttct---agctctttcaacttaatgacacatggtagtggtgatgtcgttaactgtaa |
2449509 |
T |
|
| Q |
304 |
caatgttgttg |
314 |
Q |
| |
|
||||||||||| |
|
|
| T |
2449510 |
caatgttgttg |
2449520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 2621428 - 2621750
Alignment:
| Q |
1 |
tggacgcaccaccatcatcattgcgcaccgcttatcaaccatccaaaatgctgacatcattgcagttgtccaaaatggtaagatcatggaaacgggatct |
100 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||| ||||| |||||||| ||||||||||| ||||| |||||||||| |||| |||||| |||||| |
|
|
| T |
2621428 |
tggacgcaccaccatcatcatcgctcaccgcttatccaccattcaaaatgcagacatcattgcggttgttcaaaatggtatgatcgcggaaacaggatct |
2621527 |
T |
|
| Q |
101 |
cacgaaagcctcatgcaaaatgaaaattctctttacacctccctcgttcgactccaacaaactagaaatgatcaaagtgatgacactccatctatcatga |
200 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||| ||||||| ||||| ||||| ||||| | ||| || |||| |||||||| ||||||||||||| |
|
|
| T |
2621528 |
catgaaagcctcatgcaaaatgacaattctctttacgcctcccttgttcgtctccagcaaacaaaaaaggaccaaaccgatgacaccccatctatcatga |
2621627 |
T |
|
| Q |
201 |
atagaggtcacatgcaaaacacgagtagtcgtagactcgtaagtcgttctagcagctctttcaactcaatgacacatggtggtgatgatatccttaatta |
300 |
Q |
| |
|
|||||| |||||||||||||| |||| || |||||||||| |||| ||| | |||||||||||||| || | || |||||||| | ||||||| |
|
|
| T |
2621628 |
atagagatcacatgcaaaacatgagtggttgtagactcgtgagtccatct---aactctttcaactcaacaacgcgaggcagtgatgatgtttttaatta |
2621724 |
T |
|
| Q |
301 |
taacaatgttgttgaagatattgtta |
326 |
Q |
| |
|
||||||||| ||||||||| |||||| |
|
|
| T |
2621725 |
taacaatgtcgttgaagatgttgtta |
2621750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 2436031 - 2436342
Alignment:
| Q |
1 |
tggacgcaccaccatcatcattgcgcaccgcttatcaaccatccaaaatgctgacatcattgcagttgtccaaaatggtaagatcatggaaacgggatct |
100 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
2436031 |
tggacgcaccaccatcatcatcgctcaccgcttatccaccatccaaaatgcagacatcattgcagttgttcaaaatggtaagatcatggaaacaggatct |
2436130 |
T |
|
| Q |
101 |
cacgaaagcctcatgcaaaatgaaaattctctttacacctccctcgttcgactccaacaaactagaaatgatcaaagtgatgacactccatctatcatga |
200 |
Q |
| |
|
||||||||||||||||||||||| | ||| ||||||| ||||| |||| |||||||| || | |||||| ||| | ||| || | ||||||||||| |
|
|
| T |
2436131 |
cacgaaagcctcatgcaaaatgacagttccatttacacatccctagttcatctccaacacaccaaaaatgaccaagacggtgataccctatctatcatga |
2436230 |
T |
|
| Q |
201 |
atagaggtcacatgcaaaacacgagtagtcgtagactcgtaagtcgttctagcagctctttcaactcaatgacacatggtggtgatgatatccttaatta |
300 |
Q |
| |
|
||| | |||||| |||| ||||| | | ||||||||| ||||||||||||||||||||||||||||||| |||| || ||||||| |
|
|
| T |
2436231 |
ataaacatcacat------------tagttgtagatttttgagtcgttct---agctctttcaactcaatgacacatggtggtggtgatgtcgttaatta |
2436315 |
T |
|
| Q |
301 |
taacaatgttgttgaagatattgttaa |
327 |
Q |
| |
|
||||||||||||||||||| ||||||| |
|
|
| T |
2436316 |
taacaatgttgttgaagatgttgttaa |
2436342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 2589861 - 2590113
Alignment:
| Q |
1 |
tggacgcaccaccatcatcattgcgcaccgcttatcaaccatccaaaatgctgacatcattgcagttgtccaaaatggtaagatcatggaaacgggatct |
100 |
Q |
| |
|
||||||||||||||||||||| || |||||| |||| |||||||||||||| ||||||||||||||||| |||||||||||||| ||||||| |||||| |
|
|
| T |
2589861 |
tggacgcaccaccatcatcatcgctcaccgcctatctaccatccaaaatgcagacatcattgcagttgttcaaaatggtaagattatggaaataggatct |
2589960 |
T |
|
| Q |
101 |
cacgaaagcctcatgcaaaatgaaaattctctttacacctccctcgttcgactccaacaaactagaaatgatcaaagtgatgacactccatctatcatga |
200 |
Q |
| |
|
|||||||||||| ||||| |||| ||||| |||| ||||||| ||||| || |||||||| | || || ||| ||| ||||| ||||||||||||| |
|
|
| T |
2589961 |
cacgaaagcctcgtgcaagatgacaattcaatttatgcctcccttgttcgtcttcaacaaacaaaaagggacgaaactgacgacaccccatctatcatga |
2590060 |
T |
|
| Q |
201 |
atagaggtcacatgcaaaacacgagtagtcgtagactcgtaagtcgttctagc |
253 |
Q |
| |
|
||| || |||||||||||||||||||| | |||||||||| |||| ||||||| |
|
|
| T |
2590061 |
ataaagatcacatgcaaaacacgagtacttgtagactcgttagtccttctagc |
2590113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 387 - 458
Target Start/End: Original strand, 2449578 - 2449649
Alignment:
| Q |
387 |
agaaggtcaaggttccttcgtttcaaaggttgttggcaatgaatgtgcctgaatggaagcaagcatgtttgg |
458 |
Q |
| |
|
||||||| ||||||||||| |||| ||| ||||| |||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
2449578 |
agaaggtaaaggttccttcatttcgaagattgttagcaatgaatgtgccagaatggaagcaagcgtgtttgg |
2449649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 458
Target Start/End: Original strand, 2436377 - 2436446
Alignment:
| Q |
389 |
aaggtcaaggttccttcgtttcaaaggttgttggcaatgaatgtgcctgaatggaagcaagcatgtttgg |
458 |
Q |
| |
|
||||| ||||||||||| |||| ||| |||||||||||||||| || ||||||||||||| |||||||| |
|
|
| T |
2436377 |
aaggtgaaggttccttcatttcgaagattgttggcaatgaatgctccagaatggaagcaagtatgtttgg |
2436446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 2598343 - 2598288
Alignment:
| Q |
1 |
tggacgcaccaccatcatcattgcgcaccgcttatcaaccatccaaaatgctgaca |
56 |
Q |
| |
|
||||||||||||||||||||| || ||||| ||||| |||||||||||||| |||| |
|
|
| T |
2598343 |
tggacgcaccaccatcatcatcgctcaccgattatctaccatccaaaatgcagaca |
2598288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 387 - 458
Target Start/End: Original strand, 2621787 - 2621858
Alignment:
| Q |
387 |
agaaggtcaaggttccttcgtttcaaaggttgttggcaatgaatgtgcctgaatggaagcaagcatgtttgg |
458 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||| || || ||||||||| |||| |||| |
|
|
| T |
2621787 |
agaaggttgaggttccttcctttcaaaggttgttggcaatgaatggaccagagtggaagcaaacatgcttgg |
2621858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 458
Target Start/End: Original strand, 2590228 - 2590303
Alignment:
| Q |
383 |
aaggagaaggtcaaggttccttcgtttcaaaggttgttggcaatgaatgtgcctgaatggaagcaagcatgtttgg |
458 |
Q |
| |
|
||| ||||||| |||||||||| ||| || |||||||||||||||||| || || ||||||||| ||||||||| |
|
|
| T |
2590228 |
aagaagaaggttgaggttccttcctttaaatggttgttggcaatgaatggaccagagtggaagcaaacatgtttgg |
2590303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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