View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3863_low_14 (Length: 456)
Name: NF3863_low_14
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3863_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Complemental strand, 48093208 - 48092767
Alignment:
| Q |
1 |
gtgtgcatagcccaagtccattgtaaggtccttgaccacaacatgctatctgtgatgtaacaaatcctgcataaccaatacnnnnnnnnnnn-ataagaa |
99 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
48093208 |
gtgtgcatagcccaagtccattgtagggtccttgaccacaacatgctatctgtgatgtaacaaatcctgcataaccaatacttttttttttatataagaa |
48093109 |
T |
|
| Q |
100 |
ggtaatattaccataaatctaatagttatgctaccattattaaattactgtatatcatatgaatatgattagtatagttacgttacgttaccatatgctt |
199 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
48093108 |
ggtaatattaccataaatctaatagttatgctaccattattaaattactgtatatcatatgaatatgattagtatagttacgttac-----catatgctt |
48093014 |
T |
|
| Q |
200 |
ggggattattgacgaagtcaagggccatctgccttgtgttagctcccatgaatacatttaaaccaatttcattgttgagttgttggattatttgaataag |
299 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
48093013 |
ggggattattgacgaagtcaagggccatctgccttgtgttagctcccatgaatacatttgaaccaatttcattgttgagttgttggattatttgaataag |
48092914 |
T |
|
| Q |
300 |
ttgtggattgaacaaagctgctgcacgttgtagctcaactgagcatcccccatttgtgcctcgttgtgctaattctgctggaacacaaccaattggacct |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48092913 |
ttgtggattgaacaaagctgctgcacgttgtagctcaactgagcatcccccatttgtgcctcgttgtgctaattctgctggaacacaaccaattggacct |
48092814 |
T |
|
| Q |
400 |
gttcctgtcactatcaccctacgtgctccaagatcgtatagtctctg |
446 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48092813 |
gttcctgtcactatcaccctacgtgctccaagatcgtatagtctctg |
48092767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 9 - 332
Target Start/End: Original strand, 13324606 - 13324929
Alignment:
| Q |
9 |
agcccaagtccattgtaaggtccttgaccacaacatgctatctgtgatgtaacaaatcctgcata----accaatacnnnnnnnnnnnataagaaggtaa |
104 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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|
| T |
13324606 |
agcccaagtccattgtagggtccttgaccacaacatgctatctgtgatgtaacaaatcctgcatatataaccaatactttttttt---ataagaaggtaa |
13324702 |
T |
|
| Q |
105 |
tattaccataaatctaatagttatgctaccattat---------taaattactgtatatcatatgaatatgattagtatagttacgttacgttaccatat |
195 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||| |
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|
| T |
13324703 |
tattaccataaatttaatagttatgctaccattatattgtatattaaattactctatatcatatgaatatgattagtatagtta----------ccatat |
13324792 |
T |
|
| Q |
196 |
gcttggggattattgacgaagtcaagggccatctgccttgtgttagctcccatgaatacatttaaaccaatttcattgttgagttgttggattatttgaa |
295 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||| |||||||||| |
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|
| T |
13324793 |
gcttgaggattattgacgaagtcaagggccatttgccttgtgttggctcccatgaatacatttgaaccaatttcattgttgagttcttgaattatttgaa |
13324892 |
T |
|
| Q |
296 |
taagttgtggattgaacaaagctgctgcacgttgtag |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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|
| T |
13324893 |
taagttgtggattgaacaaagctgctgcacgttgtag |
13324929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 48085198 - 48085138
Alignment:
| Q |
9 |
agcccaagtccattgtaaggtccttgaccacaacatgctatctgtgatgtaacaaatcctg |
69 |
Q |
| |
|
||||||||||||||||| || ||||| ||||| ||||||| || |||||| ||||||||| |
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|
| T |
48085198 |
agcccaagtccattgtatggcccttgtccacagcatgctacctttgatgttgcaaatcctg |
48085138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 9 - 332
Target Start/End: Original strand, 5666479 - 5666802
Alignment:
| Q |
9 |
agcccaagtccattgtaaggtccttgaccacaacatgctatctgtgatgtaacaaatcctgcata----accaatacnnnnnnnnnnnataagaaggtaa |
104 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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|
| T |
5666479 |
agcccaagtccattgtagggtccttgaccacaacatgctatctgtgatgtaacaaatcctgcatatataaccaatactttttttt---ataagaaggtaa |
5666575 |
T |
|
| Q |
105 |
tattaccataaatctaatagttatgctaccattat---------taaattactgtatatcatatgaatatgattagtatagttacgttacgttaccatat |
195 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||| |
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|
| T |
5666576 |
tattaccataaatttaatagttatgctaccattatattgtatattaaattactctatatcatatgaatatgattagtatagtta----------ccatat |
5666665 |
T |
|
| Q |
196 |
gcttggggattattgacgaagtcaagggccatctgccttgtgttagctcccatgaatacatttaaaccaatttcattgttgagttgttggattatttgaa |
295 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||| |||||||||| |
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|
| T |
5666666 |
gcttgaggattattgacgaagtcaagggccatttgccttgtgttggctcccatgaatacatttgaaccaatttcattgttgagttcttgaattatttgaa |
5666765 |
T |
|
| Q |
296 |
taagttgtggattgaacaaagctgctgcacgttgtag |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5666766 |
taagttgtggattgaacaaagctgctgcacgttgtag |
5666802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 367 - 446
Target Start/End: Original strand, 35354416 - 35354495
Alignment:
| Q |
367 |
gctaattctgctggaacacaaccaattggacctgttcctgtcactatcaccctacgtgctccaagatcgtatagtctctg |
446 |
Q |
| |
|
|||||| |||||||| ||||||| |||||||||||||||| ||| | ||||||||||||||||||| ||||||||||| |
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|
| T |
35354416 |
gctaatgctgctggagcacaacccattggacctgttcctgacaccagaaccctacgtgctccaagatgatatagtctctg |
35354495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 35376352 - 35376420
Alignment:
| Q |
1 |
gtgtgcatagcccaagtccattgtaaggtccttgaccacaacatgctatctgtgatgtaacaaatcctg |
69 |
Q |
| |
|
|||||||||| |||| ||||||||||| ||||| |||||||| ||||||| ||||||||||||||||| |
|
|
| T |
35376352 |
gtgtgcatagtccaatcccattgtaagggccttgtccacaacaagctatctttgatgtaacaaatcctg |
35376420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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