View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3863_low_15 (Length: 453)
Name: NF3863_low_15
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3863_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 93 - 435
Target Start/End: Original strand, 54249443 - 54249784
Alignment:
| Q |
93 |
cccagttacttcactatgcaagcaaataataatgttgtgtgattgtgttcaaaacagggtcttttggagggacagttccagtattttgaaacccaataat |
192 |
Q |
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| T |
54249443 |
cccagttacttcactatgcaagcaaataataatgttgtgtgattgtgttcaaaacagggtcttttggagggacagttccagtattttgaaacccaataat |
54249542 |
T |
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| Q |
193 |
acactacttgcggtgctggatgtcacctcacccaccatcacctacccacaccttcaacttaaagaccacatcattgatttggacaatacttataaaatgc |
292 |
Q |
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| T |
54249543 |
acactacttgcggtgctggatgtcacctcacccaccatcacctacccacaccttcaacttaa-gaccacatcattgatttggacaatacttataaaatgc |
54249641 |
T |
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| Q |
293 |
acaaatttatactaagcgccgaaatagcatagcaacaaccaagtaggaactaccctatccataatcataaaacttttaagtaaaagaaatttcaagacca |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54249642 |
acaaatttatactaagcgccgaaatagcatagcaacaaccaagtaggaactaccctatccataatcataaaacttttaagtaaaagaaatttcaagacca |
54249741 |
T |
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| Q |
393 |
aactatgctaagaacctatttgacgtagattagatagatttac |
435 |
Q |
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| T |
54249742 |
aactatgctaagaacctatttgacgtagattagatagatttac |
54249784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 54249351 - 54249404
Alignment:
| Q |
1 |
aattgataagacacttgcagataaaccaaggggcattcgtcactcgtagctcaa |
54 |
Q |
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| T |
54249351 |
aattgataagacacttgcagataaaccaaggggcattcgtcactcgtagctcaa |
54249404 |
T |
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