View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3863_low_19 (Length: 397)
Name: NF3863_low_19
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3863_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 2467042 - 2466656
Alignment:
| Q |
1 |
caagacgtcaaagtcattaagttttctccacgatatcggatgacagtaattggtcgttgtctttcatgaaatctgccaccactgtgagcttcttcaagat |
100 |
Q |
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| T |
2467042 |
caagacgtcaaagtcattaagttttctccacgatatcagatgacagtaattggtcgttgtctttcatgaaatctgccaccactgtgagcttcttcaagat |
2466943 |
T |
|
| Q |
101 |
gtcatcataattattatgatataaatgtataattaaattagaactttattctcaatttggttgtttctgcaaagaaaacttatgtatcgagttagacata |
200 |
Q |
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| T |
2466942 |
gtcatcataattattatgatataaatgtataattaaattagaactttattctcaatttggttgtttctgcaaagaaaacttatgtatcgagttagacata |
2466843 |
T |
|
| Q |
201 |
attatttaaccaactttcagttctttcttttacttgctgcaatattttgttttgtatatgccccattctttttatgaatattagatttgtaagctttaaa |
300 |
Q |
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| T |
2466842 |
attatttaaccaactttcagttctttcttttacttgctgcaatattttgttttgtatatgccccattctttttatgaatattagatttgtaagctttaaa |
2466743 |
T |
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| Q |
301 |
tgaataggccttctgtggacattctttttgtccagctgcaaaaattaattccaacattttttctaacgacgtcaacttccacaggtt |
387 |
Q |
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| T |
2466742 |
tgaataggccttctgtggacattctttttgtccagcagcaaaaattaattccaacattttttctaacgacgtcaacttccacaggtt |
2466656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 136 - 257
Target Start/End: Original strand, 5103016 - 5103136
Alignment:
| Q |
136 |
aattagaactttattctcaatttggttgtttctgcaaagaaaacttatgtatcgagttagacataattatttaaccaactttcagttctttcttttactt |
235 |
Q |
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|||||||| |||||||||||||| | |||| | |||| | |||||||| ||| ||||||||||||| |||||| |||| |||||||| ||| |||||||| |
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| T |
5103016 |
aattagaattttattctcaatttagctgttaccgcaaggcaaacttatatattgagttagacataactatttatccaaatttcagtt-tttattttactt |
5103114 |
T |
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| Q |
236 |
gctgcaatattttgttttgtat |
257 |
Q |
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|||||||| ||||||||||||| |
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| T |
5103115 |
gctgcaatgttttgttttgtat |
5103136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 180 - 257
Target Start/End: Original strand, 5107092 - 5107169
Alignment:
| Q |
180 |
ttatgtatcgagttagacataattatttaaccaactttcagttctttcttttacttgctgcaatattttgttttgtat |
257 |
Q |
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| T |
5107092 |
ttatatattgagttagacatatttatttatccagctttcagttctttcttttactttctgcaatgttttgttttgtat |
5107169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 256
Target Start/End: Complemental strand, 2485655 - 2485583
Alignment:
| Q |
183 |
tgtatcgagttagacataattatttaaccaactttcagttctttcttttacttgctgcaatattttgttttgta |
256 |
Q |
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| T |
2485655 |
tgtattgagttagacataatgatttatccaactcccagtt-ttccttttactagctgcaatgttttcttttgta |
2485583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 256
Target Start/End: Complemental strand, 2462854 - 2462783
Alignment:
| Q |
184 |
gtatcgagttagacataattatttaaccaactttcagttctttcttttacttgctgcaatattttgttttgta |
256 |
Q |
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|||| |||||||||||||| ||||| |||||| ||||| || |||||||| |||||||| |||| ||||||| |
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| T |
2462854 |
gtattgagttagacataatgatttatccaactcccagtt-ttccttttactagctgcaatgttttcttttgta |
2462783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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