View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3863_low_21 (Length: 392)
Name: NF3863_low_21
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3863_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 67 - 372
Target Start/End: Complemental strand, 31612666 - 31612361
Alignment:
| Q |
67 |
ctatgtatagttcgcgccatcttgggaagatgtttgctatgcctgagaggactgcgatgcctgttgagaagaagtagaaggtagacatgcctgcggcacc |
166 |
Q |
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| T |
31612666 |
ctatgtatagttcgcgccatcttgggaagatgtttgctatgcctgagaggactgcgatgcctgttgagaagaagtagaaggtagacatgcctgcggcacc |
31612567 |
T |
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| Q |
167 |
acgcattgtggggcctacgggctctgtggcaagtacgaaggcgcagaggccgacgccacctgtgctgaaaccagtgaggaagcggaggaagaagtaggag |
266 |
Q |
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| T |
31612566 |
acgcattgtggggcctacgggctctgtggcaagtacgaaggcgcagaggccgacgccacctgtgctgaaaccagtgaggaagcggaggaagaagtaggag |
31612467 |
T |
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| Q |
267 |
atgtaattgggggagaaggctgttaggatgccgaagatgctgtttagtatgcaaactatcgtgagagatccttttcgtccaagaaacgaatcagagagat |
366 |
Q |
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| T |
31612466 |
atgtaattgggggagaaggctgttaggatgctgaagatgctgtttaggatgcaaactatcgtgagagatccttttcgtccaagaaacgaatcagagagat |
31612367 |
T |
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| Q |
367 |
gaccaa |
372 |
Q |
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|||||| |
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| T |
31612366 |
gaccaa |
31612361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 255
Target Start/End: Original strand, 34419052 - 34419175
Alignment:
| Q |
132 |
gagaagaagtagaaggtagacatgcctgcggcaccacgcattgtggggcctacgggctctgtggcaagtacgaaggcgcagaggccgacgccacctgtgc |
231 |
Q |
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| T |
34419052 |
gagaagaagtagaaggtggacattcctgccatgccacgttttgatgggccaatgggctcggtggcaaggacgaaggcgcaaaggccaacaccgccagtgc |
34419151 |
T |
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| Q |
232 |
tgaaaccagtgaggaagcggagga |
255 |
Q |
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| T |
34419152 |
tgaaaccggtgaggaggcggagga |
34419175 |
T |
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