View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3863_low_22 (Length: 387)

Name: NF3863_low_22
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3863_low_22
NF3863_low_22
[»] chr1 (4 HSPs)
chr1 (1-377)||(8425156-8425532)
chr1 (214-373)||(30234247-30234406)
chr1 (1-173)||(30235361-30235528)
chr1 (170-215)||(30235004-30235049)
[»] chr5 (4 HSPs)
chr5 (21-373)||(22475860-22476211)
chr5 (20-256)||(26849095-26849315)
chr5 (280-373)||(26842281-26842378)
chr5 (21-134)||(15425483-15425591)
[»] chr3 (2 HSPs)
chr3 (21-373)||(1530503-1530854)
chr3 (107-204)||(26797819-26797915)
[»] chr4 (3 HSPs)
chr4 (20-173)||(5690016-5690166)
chr4 (20-151)||(25154144-25154270)
chr4 (172-215)||(25153751-25153794)
[»] chr2 (2 HSPs)
chr2 (20-173)||(29759042-29759190)
chr2 (170-215)||(29758696-29758741)
[»] chr7 (4 HSPs)
chr7 (214-355)||(39327811-39327952)
chr7 (105-169)||(39327292-39327356)
chr7 (170-215)||(39327668-39327713)
chr7 (170-215)||(39718781-39718826)
[»] chr8 (1 HSPs)
chr8 (105-204)||(8396719-8396817)


Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 8425532 - 8425156
Alignment:
Q  1 aacataaagatgattctctcttgtattaaaattgccacaatggcatcgacactacttgcaatcttgaaacagaatccacactcatactatggcattggca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8425532 aacataaagatgattctctcttgtattaaaattgccacaatggcatcggcactacttgcaatcttgaaacagaatccacactcatattatggcattggca 8425433  T
Q  101 cttggcagcacttgcaatcctaggccaaagatcaacacaccccttaccaattggtccagtgatagcagaacctttcatttctcccttaggattcacaata 200  Q
    |||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8425432 cttggcagcatttgcaatcctaggccaaagatcagcacactccttaccaattggtccagtgatagcagaacctttcatttctcccttaggattcacaata 8425333  T
Q  201 acaccagcattatcttcgaagtacatgaagacaccatcctttgggcgccaaggcttgcactggcgaacgatggcagctggcaaaaccttcttcctgagat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  8425332 acaccagcattatcttcgaagtacatgaagacaccatcctttgggcgccaaggcttgcactgacgaacgatgacagctggcaaaaccttcttcctgagat 8425233  T
Q  301 caggttttcccttcttcatagtagccatcaccatgtcaccaacacaagctgaaggaagacgattcaagctacctttg 377  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8425232 caggttttcccttctacatagtagccatcaccatgtcaccaacacaagctgaaggaagacgattcaacctacctttg 8425156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 214 - 373
Target Start/End: Complemental strand, 30234406 - 30234247
Alignment:
Q  214 cttcgaagtacatgaagacaccatcctttgggcgccaaggcttgcactggcgaacgatggcagctggcaaaaccttcttcctgagatcaggttttccctt 313  Q
    |||| ||||||||||||||||| |||||| ||||||| ||||| | ||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  30234406 cttcaaagtacatgaagacaccgtcctttcggcgccatggcttacgctgacgaacgatgacagctggcaaaaccttcttcctgagatcaggctttccctt 30234307  T
Q  314 cttcatagtagccatcaccatgtcaccaacacaagctgaaggaagacgattcaagctacc 373  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  30234306 cttcacagtagccatcaccatgtcaccagcacaagctgaaggaagacgattcaacctacc 30234247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 30235528 - 30235361
Alignment:
Q  1 aacataaagatgattctctcttgtattaaaattgccaca--atggcatcgacactacttgcaatcttgaaacagaatccacactcatactatggcattgg 98  Q
    ||||||||||| | | |||||||||||||||||| ||||  ||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||      
T  30235528 aacataaagataagtatctcttgtattaaaattgtcacacaatggcatcggcactacttgcaatcttgaaacagaatccacgctcatacaatggcatt-- 30235431  T
Q  99 cacttggcagcacttgcaatcctaggccaaagatcaacacaccccttaccaattggtccagtgatagcagaacct 173  Q
         ||||||||||||||||||||||||||||||| ||||  ||||| ||||||| || |||||||||||||||    
T  30235430 -----ggcagcacttgcaatcctaggccaaagatcagcacattccttagcaattggaccggtgatagcagaacct 30235361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 30235049 - 30235004
Alignment:
Q  170 acctttcatttctcccttaggattcacaataacaccagcattatct 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  30235049 acctttcatttctcccttaggattcacaataacaccagcattatct 30235004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 21 - 373
Target Start/End: Original strand, 22475860 - 22476211
Alignment:
Q  21 ttgtattaaaattgccacaa--tggcatcgacactacttgcaatcttgaaacagaatccacactcatactatggcattggcacttggcagcacttgcaat 118  Q
    ||||||||||||| ||| ||  |||||||  |||||| ||||||||||||||| ||||||||||||||| |||| |||||       |||||||||||||    
T  22475860 ttgtattaaaatttccaaaaaatggcatcagcactacctgcaatcttgaaacataatccacactcatacaatggtattgg-------cagcacttgcaat 22475952  T
Q  119 cctaggccaaagatcaacacaccccttaccaattggtccagtgatagcagaacctttcatttctcccttaggattcacaataacaccagcattatcttcg 218  Q
    | |||||||||| ||| ||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |    
T  22475953 cataggccaaagctcagcacactcgttgccaattggtccagtgatagcagaacctttcatttctcccttaggattcacaataacgccggcattatctttg 22476052  T
Q  219 aagtacatgaagacaccatcctttgggcgccaaggcttgcactggcgaacgatggcagctggcaaaaccttcttcctgagatcaggttttcccttcttca 318  Q
    |||||||||||||||| ||| ||| ||||||||||||| | ||| ||||||||| || ||||||||||||||||| ||||||||||||||||||||||||    
T  22476053 aagtacatgaagacacaatcattttggcgccaaggcttacgctgacgaacgatgacaactggcaaaaccttcttcatgagatcaggttttcccttcttca 22476152  T
Q  319 tagtagcc----atcaccatgtcaccaacacaagctgaaggaagacgattcaagctacc 373  Q
     |||||||    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  22476153 cagtagccatcaatcaccatgtcaccaacacaagctgaaggaagacgattcaatctacc 22476211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 20 - 256
Target Start/End: Complemental strand, 26849315 - 26849095
Alignment:
Q  20 cttgtattaaaattgccac--aatggcatcgacactacttgcaatcttgaaacagaatccacactcatactatggcattggcacttggcagcacttgcaa 117  Q
    |||| ||||||||| ||||  |||||||||  |||||| ||||||||||||||| ||||||||||||||| ||||||||||||       ||||||||||    
T  26849315 cttggattaaaatttccactaaatggcatcagcactacctgcaatcttgaaacataatccacactcatacaatggcattggca-------gcacttgcaa 26849223  T
Q  118 tcctaggccaaagatcaacacaccccttaccaattggtccagtgatagcagaacctttcatttctcccttaggattcacaataacaccagcattatcttc 217  Q
    || |||||||||| ||| ||||  | |||||||||||||||||||||           ||||||||||||||||||||||||||| || |||||||||||    
T  26849222 tcataggccaaagctcagcacattcattaccaattggtccagtgata-----------catttctcccttaggattcacaataacgccggcattatcttc 26849134  T
Q  218 gaagtacatgaagacaccatcctttgggcgccaaggctt 256  Q
    ||||||||||||||||| ||||||| |||| ||||||||    
T  26849133 gaagtacatgaagacacaatccttttggcgtcaaggctt 26849095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 280 - 373
Target Start/End: Complemental strand, 26842378 - 26842281
Alignment:
Q  280 gcaaaaccttcttcctgagatcaggttttcccttcttcatagtagccatca----ccatgtcaccaacacaagctgaaggaagacgattcaagctacc 373  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||    ||||||||||||||||||||||||||||||||||||| |||||    
T  26842378 gcaaaaccttcttcctgagatcaggtattcccttcttcacagtagccatcaatcaccatgtcaccaacacaagctgaaggaagacgattcaatctacc 26842281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 134
Target Start/End: Complemental strand, 15425591 - 15425483
Alignment:
Q  21 ttgtattaaaattgccacaat--ggcatcgacactacttgcaatcttgaaacagaatccacactcatactatggcattggcacttggcagcacttgcaat 118  Q
    ||||||||||| ||||||||   |||||||  ||||||||| |||||||||||||||| |||||||||| ||||||||       |||||||||||||||    
T  15425591 ttgtattaaaactgccacaaaagggcatcggaactacttgcgatcttgaaacagaatcaacactcatacaatggcatt-------ggcagcacttgcaat 15425499  T
Q  119 cctaggccaaagatca 134  Q
    ||||||||||| ||||    
T  15425498 cctaggccaaatatca 15425483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 21 - 373
Target Start/End: Complemental strand, 1530854 - 1530503
Alignment:
Q  21 ttgtattaaaattgccacaa--tggcatcgacactacttgcaatcttgaaacagaatccacactcatactatggcattggcacttggcagcacttgcaat 118  Q
    ||||||||||||| ||||||  |||||||  |||||| ||||||||||||||| ||||||||||||||| ||||||||||||       |||||||||||    
T  1530854 ttgtattaaaatttccacaaaatggcatcagcactacctgcaatcttgaaacataatccacactcatacaatggcattggca-------gcacttgcaat 1530762  T
Q  119 cctaggccaaagatcaacacaccccttaccaattggtccagtgatagcagaacctttcatttctcccttaggattcacaataacaccagcattatcttcg 218  Q
    | |||||||||| ||| ||||| | |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||  ||  ||||||||| |    
T  1530761 cataggccaaagctcagcacactcgttaccaattggtccagtgatagcataatctttcatttctcccttaggattcacaataatgccgtcattatctttg 1530662  T
Q  219 aagtacatgaagacaccatcctttgggcgccaaggcttgcactggcgaacgatggcagctggcaaaaccttcttcctgagatcaggttttcccttcttca 318  Q
    |||||||||||||||| ||||||| ||||||||||||| | ||| ||||||||| || ||||||||||||||||||||||||||||||| ||||||||||    
T  1530661 aagtacatgaagacacgatccttttggcgccaaggcttacgctgacgaacgatgacaactggcaaaaccttcttcctgagatcaggtttccccttcttca 1530562  T
Q  319 tagtagcc----atcaccatgtcaccaacacaagctgaaggaagacgattcaagctacc 373  Q
     |||||||    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  1530561 cagtagccatcaatcaccatgtcaccaacacaagctgaaggaagacgattcaatctacc 1530503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 107 - 204
Target Start/End: Original strand, 26797819 - 26797915
Alignment:
Q  107 agcacttgcaatcctaggccaaagatcaacacaccccttaccaattggtccagtgatagcagaacctttcatttctcccttaggattcacaataacac 204  Q
    ||||||||||||||||| ||| | |||| ||||| |||| |||||||| ||| | |||||||| |||||||||||| |||| ||||| ||||||||||    
T  26797819 agcacttgcaatcctagaccataaatcagcacactccttcccaattggaccactaatagcagaccctttcatttct-cctttggattaacaataacac 26797915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 20 - 173
Target Start/End: Original strand, 5690016 - 5690166
Alignment:
Q  20 cttgtattaaaattgccacaat--ggcatcgacactacttgcaat--cttgaaacagaatccacactcatactatggcattggcacttggcagcacttgc 115  Q
    |||||||||||| ||||||||   ||||||   ||||||||||||  |||||||||||||| |||||||||| ||||||||||       ||||||||||    
T  5690016 cttgtattaaaactgccacaaaagggcatcagaactacttgcaatatcttgaaacagaatcaacactcatacaatggcattgg-------cagcacttgc 5690108  T
Q  116 aatcctaggccaaagatcaacacaccccttaccaattggtccagtgatagcagaacct 173  Q
    ||||||||||||||||||| ||||| |||||||||||||||| |||||||| ||||||    
T  5690109 aatcctaggccaaagatcagcacactccttaccaattggtcctgtgatagcggaacct 5690166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 151
Target Start/End: Complemental strand, 25154270 - 25154144
Alignment:
Q  20 cttgtattaaaattgccacaat--ggcatcgacactacttgcaatcttgaaacagaatccacactcatactatggcattggcacttggcagcacttgcaa 117  Q
    |||||||||||| ||||||||   |||||||  |||||||||||||||||||||||||| |||||||| | ||||||||       ||||||||||||||    
T  25154270 cttgtattaaaactgccacaaaagggcatcggaactacttgcaatcttgaaacagaatcaacactcatgcaatggcatt-------ggcagcacttgcaa 25154178  T
Q  118 tcctaggccaaagatcaacacaccccttaccaat 151  Q
    ||||||||||||||||| || || ||||| ||||    
T  25154177 tcctaggccaaagatcagcatactccttatcaat 25154144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 25153794 - 25153751
Alignment:
Q  172 ctttcatttctcccttaggattcacaataacaccagcattatct 215  Q
    |||||||||||||||||||||| ||||||||||||| |||||||    
T  25153794 ctttcatttctcccttaggattaacaataacaccagaattatct 25153751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 29759190 - 29759042
Alignment:
Q  20 cttgtattaaaattgccacaat--ggcatcgacactacttgcaatcttgaaacagaatccacactcatactatggcattggcacttggcagcacttgcaa 117  Q
    |||||||||||| ||||||||   ||||| |  |||||||||||||||||||||||||| |||||||||| ||| ||||||||       ||||||||||    
T  29759190 cttgtattaaaactgccacaaaagggcattggaactacttgcaatcttgaaacagaatcaacactcatacaatgacattggca-------gcacttgcaa 29759098  T
Q  118 tcctaggccaaagatcaacacaccccttaccaattggtccagtgatagcagaacct 173  Q
    ||||||||||||||||| ||||| |||| ||||||||||| |||||| | ||||||    
T  29759097 tcctaggccaaagatcagcacactcctttccaattggtcctgtgataacggaacct 29759042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 29758741 - 29758696
Alignment:
Q  170 acctttcatttctcccttaggattcacaataacaccagcattatct 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  29758741 acctttcatttctcccttaggattcacaataacaccagcattatct 29758696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 214 - 355
Target Start/End: Original strand, 39327811 - 39327952
Alignment:
Q  214 cttcgaagtacatgaagacaccatcctttgggcgccaaggcttgcactggcgaacgatggcagctggcaaaaccttcttcctgagatcaggttttccctt 313  Q
    |||||||||||||||| ||||| |||||| ||||||| || || | ||| ||||||||| | || || |  |||||||| | ||||||||| ||||||||    
T  39327811 cttcgaagtacatgaaaacaccgtcctttcggcgccatggtttacgctgacgaacgatgacggcaggaagcaccttcttacggagatcaggctttccctt 39327910  T
Q  314 cttcatagtagccatcaccatgtcaccaacacaagctgaagg 355  Q
    |||||  || |||||||||||||||||| | |||||||||||    
T  39327911 cttcacggtggccatcaccatgtcaccagcgcaagctgaagg 39327952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 39327292 - 39327356
Alignment:
Q  105 gcagcacttgcaatcctaggccaaagatcaacacaccccttaccaattggtccagtgatagcaga 169  Q
    ||||||||||||||||||||||| |||||| ||||| ||||  ||||||| ||||| ||||||||    
T  39327292 gcagcacttgcaatcctaggccatagatcagcacactccttcgcaattggaccagtaatagcaga 39327356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 39327668 - 39327713
Alignment:
Q  170 acctttcatttctcccttaggattcacaataacaccagcattatct 215  Q
    ||||||||||||||| || ||||| |||||||||||||||||||||    
T  39327668 acctttcatttctcctttgggattaacaataacaccagcattatct 39327713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 39718781 - 39718826
Alignment:
Q  170 acctttcatttctcccttaggattcacaataacaccagcattatct 215  Q
    |||||| |||||||| || ||||| |||||||||||||||||||||    
T  39718781 accttttatttctcctttgggattaacaataacaccagcattatct 39718826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 204
Target Start/End: Original strand, 8396719 - 8396817
Alignment:
Q  105 gcagcacttgcaatcctaggccaaagatcaacacaccccttaccaattggtccagtgatagcagaacctttcatttctcccttaggattcacaataacac 204  Q
    ||||||||||||||||||| ||| | |||| ||||| |||| |||||| | ||||| |||| ||| |||||||||||| |||| ||||| ||||||||||    
T  8396719 gcagcacttgcaatcctagaccataaatcagcacactccttcccaattcgaccagtaatagtagaccctttcatttct-cctttggattaacaataacac 8396817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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