View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3863_low_23 (Length: 384)
Name: NF3863_low_23
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3863_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 373
Target Start/End: Original strand, 48138792 - 48139149
Alignment:
| Q |
19 |
tttcctccatattttcaaaattctggtattgcaacttaatgcaacttaaaaaagaaaactagcactccctatcaaagcttttttaaatttcttcacaaaa |
118 |
Q |
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| T |
48138792 |
tttcctccatattttcaaaattctggtattgcaacttaatgcaacttaaaaaagaaaactagcactccctatcaaagcttttttaaatttcttcacaaaa |
48138891 |
T |
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| Q |
119 |
ggaattgatacacatgcataaacagtctagcagtttcaaagagtcaaaaataattgagcacagtgaaattcaattatcactttaaattgaagaaaactga |
218 |
Q |
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| T |
48138892 |
ggaattgatacacatgcataaacagtctagcagtttcaaagagtcaaaaataattgagcacagtgaaattcaattatcactttaaattgaagaaaactga |
48138991 |
T |
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| Q |
219 |
ttaatttggcgttaatctgtttcgagcaagctcttagctaggtaactgtccttgatcatgacatataatat---ataaaaaacacatggttaatgaacat |
315 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
48138992 |
ttaatttggcattaatctgtttcgagcaagctcttagctaggtaactgtccttgatcatgacatataatataaaaaaaaaaacacatggttaatgaacat |
48139091 |
T |
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| Q |
316 |
ttactaacaattcggaatgttgctgctggttgcaacaattaaatcaaaggtttttcat |
373 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48139092 |
ttacaaacaattcggaatgttgctgctggttgcaacaattaaatcaaaggtttttcat |
48139149 |
T |
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