View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3863_low_24 (Length: 381)
Name: NF3863_low_24
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3863_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 7 - 365
Target Start/End: Original strand, 2741323 - 2741681
Alignment:
| Q |
7 |
tgagatgaattagtatatgattttctttaagcttgcgtgtaaaacaaatgtttgaatctcatatctaagattccattgaagaaaataagcatttgaaaaa |
106 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||| ||| |||||||||| |||||||| |
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| T |
2741323 |
tgagatgaattagtatatgattttctttaagcttgtgggtaaaacaaatgtttgaatctcatatctaagatttcatcgaataaaataagcagttgaaaaa |
2741422 |
T |
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| Q |
107 |
taacggaga-catgagctgaaacagagtctgtctgtccctgaagtcggatgttcattccagaggtttgggtgaaatttgggttaatggagtttggatagc |
205 |
Q |
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|| |||||| |||||||||||||||||||||| ||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2741423 |
tagcggagatcatgagctgaaacagagtctgtttgtacctgaagttacatgttcattccagaggtttgagtgaaatttgggttaatggagtttggatagc |
2741522 |
T |
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| Q |
206 |
tgatcaatagtgatcattttgatatataaaagtgagagatgatttggtccaaaaatttcaaactttaccaatgaactatgatgtttgttataaaatacca |
305 |
Q |
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||||||||||||||||||||| ||||||||||||||||| ||||| || | ||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2741523 |
tgatcaatagtgatcattttgttatataaaagtgagagacgatttagtaacagaatttcaaactttaccaatgaactatgatttttgttataaaatacca |
2741622 |
T |
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| Q |
306 |
gtatgctttacaaaaattccgccatactaaaaaacttcaacacaattaaaatacataact |
365 |
Q |
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|||| ||||||||||||| |||| |||| ||||||||||||||||||||||||||||||| |
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| T |
2741623 |
gtatactttacaaaaatttcgccgtact-aaaaacttcaacacaattaaaatacataact |
2741681 |
T |
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