View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3863_low_26 (Length: 367)

Name: NF3863_low_26
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3863_low_26
NF3863_low_26
[»] chr6 (3 HSPs)
chr6 (98-153)||(24414328-24414383)
chr6 (149-191)||(1759099-1759141)
chr6 (171-210)||(31038975-31039014)
[»] chr7 (1 HSPs)
chr7 (71-132)||(439887-439948)
[»] chr5 (1 HSPs)
chr5 (141-211)||(31184231-31184299)
[»] chr8 (1 HSPs)
chr8 (148-185)||(14983485-14983522)


Alignment Details
Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 98 - 153
Target Start/End: Original strand, 24414328 - 24414383
Alignment:
Q  98 tcaaaccgatacaattaatagatggaaggaagaaatcttcaattcttcactaacaa 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  24414328 tcaaaccgatacaattaatagatggaaggaagaaatcttcaattctgcactaacaa 24414383  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 191
Target Start/End: Complemental strand, 1759141 - 1759099
Alignment:
Q  149 aacaaacacactaacatttcaattctaaaacctaacattacaa 191  Q
    |||||| |||||||||||||||| |||||||||||||||||||    
T  1759141 aacaaatacactaacatttcaatcctaaaacctaacattacaa 1759099  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 210
Target Start/End: Complemental strand, 31039014 - 31038975
Alignment:
Q  171 ttctaaaacctaacattacaagtattcaattaaaaattca 210  Q
    |||||||||||||||||||||||||||||||  |||||||    
T  31039014 ttctaaaacctaacattacaagtattcaattttaaattca 31038975  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 71 - 132
Target Start/End: Original strand, 439887 - 439948
Alignment:
Q  71 tcacactgctttctctcttttagcttctcaaaccgatacaattaatagatggaaggaagaaa 132  Q
    |||||||  ||||||||||||||||||||||||| || ||||||| ||||||||||||||||    
T  439887 tcacactaatttctctcttttagcttctcaaaccaattcaattaacagatggaaggaagaaa 439948  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 31184299 - 31184231
Alignment:
Q  141 tcttcactaacaaacacactaacatttcaattctaaaacctaacattacaagtattcaattaaaaattcag 211  Q
    |||||| ||||||||| || ||||||||||||||||||||||  || ||||||||| ||||||||||||||    
T  31184299 tcttcattaacaaacaaacaaacatttcaattctaaaaccta--ataacaagtattgaattaaaaattcag 31184231  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 14983485 - 14983522
Alignment:
Q  148 taacaaacacactaacatttcaattctaaaacctaaca 185  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  14983485 taacaaacacactaacatttcaattttaaaacctaaca 14983522  T

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