View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3863_low_3 (Length: 770)

Name: NF3863_low_3
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3863_low_3
NF3863_low_3
[»] chr3 (9 HSPs)
chr3 (20-563)||(30717139-30717682)
chr3 (562-764)||(30717707-30717909)
chr3 (20-297)||(30705164-30705447)
chr3 (20-186)||(30698846-30699012)
chr3 (661-732)||(44717077-44717148)
chr3 (26-172)||(30708389-30708535)
chr3 (658-732)||(26007779-26007853)
chr3 (21-115)||(30799850-30799944)
chr3 (583-637)||(26007679-26007733)
[»] chr1 (5 HSPs)
chr1 (583-684)||(44901416-44901512)
chr1 (512-557)||(36495558-36495603)
chr1 (583-620)||(33185039-33185076)
chr1 (583-620)||(33858188-33858225)
chr1 (583-620)||(33922698-33922735)
[»] chr8 (1 HSPs)
chr8 (583-659)||(5124499-5124575)
[»] scaffold0004 (1 HSPs)
scaffold0004 (585-638)||(228047-228101)
[»] chr5 (1 HSPs)
chr5 (583-659)||(30874658-30874734)
[»] chr4 (1 HSPs)
chr4 (608-662)||(30496703-30496757)


Alignment Details
Target: chr3 (Bit Score: 520; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 20 - 563
Target Start/End: Original strand, 30717139 - 30717682
Alignment:
Q  20 aaatcctccatcaacagaaacaatctggccagtgatgtaggaagcagctggcaggcaaaggaaagtcaccaaggaagacacttcatgtgtttctgctata 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30717139 aaatcctccatcaacagaaacaatctggccagtgatgtaggaagcagctggcaggcaaaggaaagtcaccaaggaagacacttcatgtgtttctgctata 30717238  T
Q  120 cgctttattggtgttcgagatagtacttgattcacaaactcttcgttagcaattagctgtaagaaagacaaattagcaacacaagttatgaacaaaacat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30717239 cgctttattggtgttcgagatagtacttgattcacaaactcttcgttagcaattagctgtaagaaagacaaattagcaacacaagttatgaacaaaacat 30717338  T
Q  220 tgccattaatagattaatactacagatgagcacactgacattacagtcacatatatgttttgaatcatcagcacttaatgaattagcctatgatagcaga 319  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30717339 tgccattaatagattaatactacagatgagcacactaacattacagtcacatatatgttttgaatcatcagcacttaatgaattagcctatgatagcaga 30717438  T
Q  320 aaaccctccatacacagataaacaaaccacctacacaaacacagcaggtacaacacactacactagagcatgtgcagatccaaaaaagatgttaaagagc 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  30717439 aaaccctccatacacagataaacaaaccacctacacaaacacagcaggtacaacacactacactagagcatgtgcagatccaagaaagatgttacagagc 30717538  T
Q  420 caaacctatgtgtcataacaaataagtacatattttccatgttgctgccctcaaagccagttcatttcttattcatatgtattaatttctatgtagtcaa 519  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30717539 caaacctatgtgtcataacaaataggtccatattttccatgttgctgccctcaaagccagttcatttcttattcatatgtattaatttctatgtagtcaa 30717638  T
Q  520 tcccggatagcggccgaccccaagagtgggatagcgggtagcgg 563  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  30717639 tcccggatagcggccgaccccaaaagtgggatagcgggtagcgg 30717682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 562 - 764
Target Start/End: Original strand, 30717707 - 30717909
Alignment:
Q  562 ggacaaattacaataatgaggtaaagtataaacaaccatatatttgatataaaattaaacaaataactcaaaactcatggaacactcatacatcaaaaac 661  Q
    ||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30717707 ggacaaattacatgaatgaggtaaagtataaaaaaccatatatttgatataaaattaaacaaataactcaaaactcatggaacactcataaatcaaaaac 30717806  T
Q  662 attcacaagtcttaatcaaaacattacatccaattccaaactccaacaaaagtcaaggattggccgggatcctctccgttgcgattttcctctgtgctcc 761  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  30717807 attcacaagtcttaatcaaaacattacatccaattccaaactccaacacaagtcaaggattggccgggatcctctccgttgcgattttcctctgggctgc 30717906  T
Q  762 tcc 764  Q
    |||    
T  30717907 tcc 30717909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 20 - 297
Target Start/End: Original strand, 30705164 - 30705447
Alignment:
Q  20 aaatcctccatcaacagaaacaatctggccagtgatgtaggaagcagctggcaggcaaaggaaagtcaccaaggaagacacttcatgtgtttctgctata 119  Q
    ||||||||| ||||| |||||| | || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  30705164 aaatcctccgtcaacggaaacagtttgtccagtgatgtaggaagcagctggcaggcaaaggaaagtcaccaaggcagacacttcatgtgtttctgctatc 30705263  T
Q  120 cgctttattggtgttcgagatagtacttgattcacaaactcttcgttagcaattagctgtaagaaagacaa------attagcaacacaagttatgaaca 213  Q
    || ||||| ||||||||||||| ||||| || ||||||||||| ||||||||| | |||||||||||  ||      |||||||||| |||||||| |||    
T  30705264 cgttttatcggtgttcgagataatacttcatccacaaactctttgttagcaataaactgtaagaaaggtaaagaattattagcaacataagttatgtaca 30705363  T
Q  214 aaacattgccattaatagattaata-ctacagatgagcacactgacattacagtcacatatatg-ttttgaatcatcagcacttaa 297  Q
     ||||||||||||  | |||||||| |||||||||| |||| ||||| |||||| ||| ||||| |||||| |||||| |||||||    
T  30705364 taacattgccatt--tggattaatagctacagatgatcacagtgacagtacagttacagatatgtttttgattcatcaacacttaa 30705447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 30698846 - 30699012
Alignment:
Q  20 aaatcctccatcaacagaaacaatctggccagtgatgtaggaagcagctggcaggcaaaggaaagtcaccaaggaagacacttcatgtgtttctgctata 119  Q
    |||||||||||||||||||| ||  || ||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||     
T  30698846 aaatcctccatcaacagaaataacttgtccagtgatgtaagaagcagctggcagacaaaggaaagccaccaaggaagacacttcatgtgtttctgctatc 30698945  T
Q  120 cgctttattggtgttcgagatagtacttgattcacaaactcttcgttagcaattagctgtaagaaag 186  Q
    || ||||| ||||||||||||||||||| |||||||||||||| |||||||  || |||||||||||    
T  30698946 cgttttatcggtgttcgagatagtacttcattcacaaactctttgttagcatataactgtaagaaag 30699012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 661 - 732
Target Start/End: Original strand, 44717077 - 44717148
Alignment:
Q  661 cattcacaagtcttaatcaaaacattacatccaattccaaactccaacaaaagtcaaggattggccgggatc 732  Q
    ||||| |||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||    
T  44717077 cattcccaagtcttaatcaaaacattacatccaattccaaataccaacaaaattcaaggattggccgggatc 44717148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 26 - 172
Target Start/End: Original strand, 30708389 - 30708535
Alignment:
Q  26 tccatcaacagaaacaatctggccagtgatgtaggaagcagctggcaggcaaaggaaagtcaccaaggaagacacttcatgtgtttctgctatacgcttt 125  Q
    |||||||||||||| | | || ||| |||||| |||||||||||||| ||||||||||||||||||  |||| || ||||  ||||||||||| || | |    
T  30708389 tccatcaacagaaatagtttgtccaatgatgtgggaagcagctggcaagcaaaggaaagtcaccaattaagatacgtcatccgtttctgctatccgttgt 30708488  T
Q  126 attggtgttcgagatagtacttgattcacaaactcttcgttagcaat 172  Q
    || ||||||| ||||| ||||| ||| ||| |||||  |||||||||    
T  30708489 atcggtgttctagataatacttcatttacagactctaagttagcaat 30708535  T

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Target: chr3; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 658 - 732
Target Start/End: Original strand, 26007779 - 26007853
Alignment:
Q  658 aaacattcacaagtcttaatcaaaacattacatccaattccaaactccaacaaaagtcaaggattggccgggatc 732  Q
    |||||||||||||||||||||||||||| ||||| |||| ||||  | ||||||| |||||||||||||||||||    
T  26007779 aaacattcacaagtcttaatcaaaacatgacatcaaatttcaaatacaaacaaaaatcaaggattggccgggatc 26007853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 30799944 - 30799850
Alignment:
Q  21 aatcctccatcaacagaaacaatctggccagtgatgtaggaagcagctggcaggcaaaggaaagtcaccaaggaagacacttcatgtgtttctgc 115  Q
    ||||||||||||||| ||| ||  || || |||||||| || ||||||||||| |||||||||| |||||| || || |||||||| | ||||||    
T  30799944 aatcctccatcaacacaaataacttgtccggtgatgtaagacgcagctggcagacaaaggaaagccaccaacgatgaaacttcatgagattctgc 30799850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 583 - 637
Target Start/End: Original strand, 26007679 - 26007733
Alignment:
Q  583 taaagtataaacaaccatatatttgatataaaattaaacaaataactcaaaactc 637  Q
    |||| ||||||||| ||||||||| | ||||||||||||||| |||| |||||||    
T  26007679 taaaatataaacaaacatatatttaaaataaaattaaacaaacaacttaaaactc 26007733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 583 - 684
Target Start/End: Original strand, 44901416 - 44901512
Alignment:
Q  583 taaagtataaacaaccatatatttgatataaaattaaacaaataactcaaaactcatggaacactcatacatcaaaaacattcacaagtcttaatcaaaa 682  Q
    |||| ||||||||||||||||||| |||||||| ||||||||||||||||| |||||| |||| ||||| |||||||     ||||||||||||||||||    
T  44901416 taaaatataaacaaccatatatttaatataaaagtaaacaaataactcaaagctcatgaaacattcataaatcaaaa-----cacaagtcttaatcaaaa 44901510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 512 - 557
Target Start/End: Original strand, 36495558 - 36495603
Alignment:
Q  512 gtagtcaatcccggatagcggccgaccccaagagtgggatagcggg 557  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||    
T  36495558 gtagtcaatcccggatagcggccaaccccaaaagtgggatagcggg 36495603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 583 - 620
Target Start/End: Original strand, 33185039 - 33185076
Alignment:
Q  583 taaagtataaacaaccatatatttgatataaaattaaa 620  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  33185039 taaagtataaacaaacatatatttaatataaaattaaa 33185076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 583 - 620
Target Start/End: Original strand, 33858188 - 33858225
Alignment:
Q  583 taaagtataaacaaccatatatttgatataaaattaaa 620  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  33858188 taaagtataaacaaacatatatttaatataaaattaaa 33858225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 583 - 620
Target Start/End: Complemental strand, 33922735 - 33922698
Alignment:
Q  583 taaagtataaacaaccatatatttgatataaaattaaa 620  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  33922735 taaagtataaacaaacatatatttaatataaaattaaa 33922698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 583 - 659
Target Start/End: Complemental strand, 5124575 - 5124499
Alignment:
Q  583 taaagtataaacaaccatatatttgatataaaattaaacaaataactcaaaactcatggaacactcatacatcaaaa 659  Q
    |||||||||||||| |||||||||  ||||||||||||||||||||| |||||||||| |||| ||||| |||||||    
T  5124575 taaagtataaacaaacatatatttagtataaaattaaacaaataactaaaaactcatgaaacattcataaatcaaaa 5124499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 585 - 638
Target Start/End: Complemental strand, 228101 - 228047
Alignment:
Q  585 aagtataaacaa-ccatatatttgatataaaattaaacaaataactcaaaactca 638  Q
    |||||||||||| |||||||||| ||||||||||||||||| |||||| ||||||    
T  228101 aagtataaacaaaccatatatttaatataaaattaaacaaacaactcacaactca 228047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 583 - 659
Target Start/End: Original strand, 30874658 - 30874734
Alignment:
Q  583 taaagtataaacaaccatatatttgatataaaattaaacaaataactcaaaactcatggaacactcatacatcaaaa 659  Q
    |||||||||||||| ||||||||| ||||||||||||| | || || |||||||| || ||||  |||| |||||||    
T  30874658 taaagtataaacaaacatatatttaatataaaattaaatatatcacccaaaactcgtgaaacatccataaatcaaaa 30874734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 608 - 662
Target Start/End: Complemental strand, 30496757 - 30496703
Alignment:
Q  608 atataaaattaaacaaataactcaaaactcatggaacactcatacatcaaaaaca 662  Q
    |||||||||||||||||| |||||||||||||| |||| ||| | || |||||||    
T  30496757 atataaaattaaacaaatgactcaaaactcatgaaacattcacatatgaaaaaca 30496703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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