View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3863_low_31 (Length: 336)
Name: NF3863_low_31
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3863_low_31 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 2 - 307
Target Start/End: Original strand, 2675061 - 2675384
Alignment:
| Q |
2 |
atgatgatggtggtgcgtccaaccgccgctttgtctagagcttcttgaacaactcgttcggattcagaatcaagtgcgcttgttgcttcatctagtaata |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
2675061 |
atgatgatggtggtgcgtccaaccgccgctttgtctagagcttcttgaacaactcgttcggattcagaatcaagtgcacttgttgcttcatctagtaata |
2675160 |
T |
|
| Q |
102 |
aaattttaggcatttttattacggctcttgcaatggcaatcctttgtttttgtccccctgacatctgaactcctctctccccaacctgtagtaataaaca |
201 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2675161 |
aaattttaggcatttttattatggctcttgcaatggcaatcctttgtttttgtccccctgacatctgaactcctctctccccaacctgtagtaataaaca |
2675260 |
T |
|
| Q |
202 |
ttaacatcttaatttaaacttaat-----------taatggctttaccatttcgtctatct-------nnnnnnnntagaaataaattgtaaagaattgg |
283 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
2675261 |
ttaacatcttaatttaaacttaattaatgactttataatggctttgccatttcgtctatctacaaaaaaaaaaaaatagaaataaattgtaaagaattgg |
2675360 |
T |
|
| Q |
284 |
attaattaattaatcaagattttt |
307 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
2675361 |
attaattaattaatcaagattttt |
2675384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 2 - 202
Target Start/End: Original strand, 2643212 - 2643412
Alignment:
| Q |
2 |
atgatgatggtggtgcgtccaaccgccgctttgtctagagcttcttgaacaactcgttcggattcagaatcaagtgcgcttgttgcttcatctagtaata |
101 |
Q |
| |
|
||||||||||| ||||||||||| || ||||||||||||| ||||| |||| |||||||||||||||||||||||| ||||| ||||| || | |||| |
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|
| T |
2643212 |
atgatgatggttgtgcgtccaactgcgactttgtctagagcgtcttggacaattcgttcggattcagaatcaagtgcacttgtcgcttcgtccaacaata |
2643311 |
T |
|
| Q |
102 |
aaattttaggcatttttattacggctcttgcaatggcaatcctttgtttttgtccccctgacatctgaactcctctctccccaacctgtagtaataaaca |
201 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||| |
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|
| T |
2643312 |
aaattttaggcatttttattatggctcttgcaatggcaatcctttgtttttgcccccctgacatttgaactcctctctccccaacctgtagtagtaaaca |
2643411 |
T |
|
| Q |
202 |
t |
202 |
Q |
| |
|
| |
|
|
| T |
2643412 |
t |
2643412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 2 - 198
Target Start/End: Complemental strand, 2436051 - 2435855
Alignment:
| Q |
2 |
atgatgatggtggtgcgtccaaccgccgctttgtctagagcttcttgaacaactcgttcggattcagaatcaagtgcgcttgttgcttcatctagtaata |
101 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||| ||||||||||| || || ||||||||||| ||||| |||| |
|
|
| T |
2436051 |
atgatgatggtggtgcgtccaactacagctttgtctagagcttcttggacaactcgttcagattcagaatcgagagcacttgttgcttcgtctagcaata |
2435952 |
T |
|
| Q |
102 |
aaattttaggcatttttattacggctcttgcaatggcaatcctttgtttttgtccccctgacatctgaactcctctctccccaacctgtagtaataa |
198 |
Q |
| |
|
|||||| |||||||||| || |||||||||||||||||||||||| ||||||||||| ||||| |||| ||| ||||||||||||||||||||||| |
|
|
| T |
2435951 |
gaatttttggcatttttactatggctcttgcaatggcaatcctttgcttttgtcccccagacatttgaattcccctctccccaacctgtagtaataa |
2435855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 2 - 202
Target Start/End: Original strand, 2571570 - 2571770
Alignment:
| Q |
2 |
atgatgatggtggtgcgtccaaccgccgctttgtctagagcttcttgaacaactcgttcggattcagaatcaagtgcgcttgttgcttcatctagtaata |
101 |
Q |
| |
|
|||||||||||||| |||||||| || |||||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||| |||| |||| |
|
|
| T |
2571570 |
atgatgatggtggttcgtccaactgcagctttgtctagagcttcttggacgactcgttcggattcagaatcgagtgcacttgttgcttcgtctaacaata |
2571669 |
T |
|
| Q |
102 |
aaattttaggcatttttattacggctcttgcaatggcaatcctttgtttttgtccccctgacatctgaactcctctctccccaacctgtagtaataaaca |
201 |
Q |
| |
|
|||||| ||||||||||| | |||||||||||| ||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||| |||||| |
|
|
| T |
2571670 |
gaatttttggcatttttatgatggctcttgcaattgcaattctttgcttttgtccccctgacatttgaactcccctctccccaacctgtagtagtaaaca |
2571769 |
T |
|
| Q |
202 |
t |
202 |
Q |
| |
|
| |
|
|
| T |
2571770 |
t |
2571770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 2 - 202
Target Start/End: Original strand, 2598323 - 2598523
Alignment:
| Q |
2 |
atgatgatggtggtgcgtccaaccgccgctttgtctagagcttcttgaacaactcgttcggattcagaatcaagtgcgcttgttgcttcatctagtaata |
101 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||| |||| |||| |
|
|
| T |
2598323 |
atgatgatggtggtgcgtccaactgaagctttgtctagagcttcttggacgactcgttcggattcagaatcgagtgcacttgttgcttcgtctaacaata |
2598422 |
T |
|
| Q |
102 |
aaattttaggcatttttattacggctcttgcaatggcaatcctttgtttttgtccccctgacatctgaactcctctctccccaacctgtagtaataaaca |
201 |
Q |
| |
|
|||||| ||||||||||| | |||||||||||| ||||| ||||| ||||||||||||||||| || ||||| ||||||||||||||||||| |||||| |
|
|
| T |
2598423 |
gaatttttggcatttttatgatggctcttgcaattgcaattctttgcttttgtccccctgacatttgtactcccctctccccaacctgtagtagtaaaca |
2598522 |
T |
|
| Q |
202 |
t |
202 |
Q |
| |
|
| |
|
|
| T |
2598523 |
t |
2598523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 2 - 199
Target Start/End: Complemental strand, 2589881 - 2589684
Alignment:
| Q |
2 |
atgatgatggtggtgcgtccaaccgccgctttgtctagagcttcttgaacaactcgttcggattcagaatcaagtgcgcttgttgcttcatctagtaata |
101 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||| ||||| | ||| ||||||||||| ||||| ||||||||||||||||| |||| |
|
|
| T |
2589881 |
atgatgatggtggtgcgtccaacggtagctttgtctagagcttcttggacaaccctttctgattcagaatcgagtgcacttgttgcttcatctagcaata |
2589782 |
T |
|
| Q |
102 |
aaattttaggcatttttattacggctcttgcaatggcaatcctttgtttttgtccccctgacatctgaactcctctctccccaacctgtagtaataaa |
199 |
Q |
| |
|
|||||| ||||||||||| | ||||||||||||||||||||||| ||||| ||||||||||| || ||||||||||| | ||||||||||| |||| |
|
|
| T |
2589781 |
gaatttttggcatttttatgatagctcttgcaatggcaatcctttgcttttgcccccctgacatttgtactcctctctctctaacctgtagtagtaaa |
2589684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 2 - 199
Target Start/End: Complemental strand, 2621448 - 2621251
Alignment:
| Q |
2 |
atgatgatggtggtgcgtccaaccgccgctttgtctagagcttcttgaacaactcgttcggattcagaatcaagtgcgcttgttgcttcatctagtaata |
101 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||| ||||||||| ||||||| ||||||||||||||| ||||| ||||||||||||||||| || | |
|
|
| T |
2621448 |
atgatgatggtggtgcgtccaacggtggctttgtctaaagcttcttggacaactctttcggattcagaatctagtgcacttgttgcttcatctagcaaaa |
2621349 |
T |
|
| Q |
102 |
aaattttaggcatttttattacggctcttgcaatggcaatcctttgtttttgtccccctgacatctgaactcctctctccccaacctgtagtaataaa |
199 |
Q |
| |
|
|||||| ||||||||||| | ||||||||||||| ||||||||| ||||| ||||| ||||| ||||||||||||||||||||||| |||| |||| |
|
|
| T |
2621348 |
gaatttttggcatttttatgatagctcttgcaatggaaatcctttgcttttgccccccagacatttgaactcctctctccccaacctgcagtagtaaa |
2621251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 2 - 199
Target Start/End: Complemental strand, 2449230 - 2449033
Alignment:
| Q |
2 |
atgatgatggtggtgcgtccaaccgccgctttgtctagagcttcttgaacaactcgttcggattcagaatcaagtgcgcttgttgcttcatctagtaata |
101 |
Q |
| |
|
||||| |||||||||||| |||| | ||||| || | ||||||||| |||||||||||||||||| |||| ||||| ||||||||||| ||||| |||| |
|
|
| T |
2449230 |
atgataatggtggtgcgttcaactgtggctttctcaaaagcttcttggacaactcgttcggattcaaaatctagtgcacttgttgcttcgtctagcaata |
2449131 |
T |
|
| Q |
102 |
aaattttaggcatttttattacggctcttgcaatggcaatcctttgtttttgtccccctgacatctgaactcctctctccccaacctgtagtaataaa |
199 |
Q |
| |
|
|||| | || |||| |||| |||||||||||||| ||||||||| ||||||||||||||||| || ||||| ||||||||||||| ||||| |||| |
|
|
| T |
2449130 |
gaattcttggatttttgattatggctcttgcaatggaaatcctttgcttttgtccccctgacatttgtactcccctctccccaacctatagtagtaaa |
2449033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 189
Target Start/End: Original strand, 3431228 - 3431292
Alignment:
| Q |
125 |
gctcttgcaatggcaatcctttgtttttgtccccctgacatctgaactcctctctccccaacctg |
189 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| || || | |||||||||| ||| |||||||| |
|
|
| T |
3431228 |
gctcttgcaattgcaatcctttgcttttgtccaccagataattgaactcctcgctcaccaacctg |
3431292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 153
Target Start/End: Complemental strand, 27731374 - 27731253
Alignment:
| Q |
32 |
ttgtctagagcttcttgaacaactcgttcggattcagaatcaagtgcgcttgttgcttcatctagtaataaaattttaggcatttttattacggctcttg |
131 |
Q |
| |
|
||||||| ||||| ||| ||||| ||||| ||||| ||| ||||| |||||||||||||| || ||||| |||||||| || ||| | ||||||| |
|
|
| T |
27731374 |
ttgtctaaagcttgttgtacaacacgttccgattcgacatctagtgcacttgttgcttcatcaagcaataatattttagggtttcttaaaatagctcttg |
27731275 |
T |
|
| Q |
132 |
caatggcaatcctttgtttttg |
153 |
Q |
| |
|
||||||| | |||||| ||||| |
|
|
| T |
27731274 |
caatggccaccctttgcttttg |
27731253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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