View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3863_low_33 (Length: 333)
Name: NF3863_low_33
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3863_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 21 - 332
Target Start/End: Complemental strand, 31525118 - 31524807
Alignment:
| Q |
21 |
acgccgcattcatcctctgctccgcgtaaagcggccaagcaataataggcacaccgttggttaaactctcaagcacagaaccccacccacagtgtgaaac |
120 |
Q |
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| T |
31525118 |
acgccgcattcatcctctgctccgcgtaaagcggccaagcaataataggcacaccgttggttaaactctcaagcactgaaccccacccacagtgtgaaac |
31525019 |
T |
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| Q |
121 |
aaaaccaccaatggaaggatgtttcaaaatagtgacttgtggtgcccattcatgaagaaacaaacccacattcttattcttaattctctctacaaacctc |
220 |
Q |
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| T |
31525018 |
aaaaccaccaatggaaggatgtttcaaaatagtgacttgtggtgcccattcatgaagaaacaaacccacattcttattcttaattctctctacaaacccc |
31524919 |
T |
|
| Q |
221 |
tcaggtaagtgcttacctatttgatcatcaagttcatcgccaaacccgtcaccactggatccagtggtgaaaaaagctgcgtccacagcttctgttgcgg |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31524918 |
tcaggtaagtgcttacctatttgatcatcaagttcatcgccaaacccgtcaccaccggatccagtggtgaaaaaagctgcgtccacagcttctgttgtgg |
31524819 |
T |
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| Q |
321 |
acgcacacgcac |
332 |
Q |
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| T |
31524818 |
acgcacacgcac |
31524807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 138
Target Start/End: Complemental strand, 38003492 - 38003429
Alignment:
| Q |
75 |
cgttggttaaactctcaagcacagaaccccacccacagtgtgaaacaaaaccaccaatggaagg |
138 |
Q |
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|||| |||| ||||||||||||| ||||||||||||| || ||| |||||||||||| ||||| |
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| T |
38003492 |
cgttcgttatactctcaagcacataaccccacccacattgcgaatgaaaaccaccaatagaagg |
38003429 |
T |
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