View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3863_low_34 (Length: 322)

Name: NF3863_low_34
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3863_low_34
NF3863_low_34
[»] chr1 (5 HSPs)
chr1 (143-322)||(5390629-5390808)
chr1 (199-322)||(5399404-5399527)
chr1 (196-321)||(5394220-5394345)
chr1 (2-77)||(5390482-5390557)
chr1 (12-73)||(5394056-5394118)


Alignment Details
Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 143 - 322
Target Start/End: Original strand, 5390629 - 5390808
Alignment:
Q  143 ttgttcttcccaccccaccaggcgaactttatttcaaacaatccagagctcagatcatcatggcacaatcttgtagactttagtcttgtcaatcgaacta 242  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||    
T  5390629 ttgttcttcccaccccaccaggggaactttatttcaaacaatccagagctcagatcatcatggcacaatcttgtacactttagttttgtcaatccaacta 5390728  T
Q  243 atgaaagaattcttagaattcctaaatcccaagaatccatgttctttagccttgttcatactatccaacacaccctccac 322  Q
    |||||   |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  5390729 atgaacacattcttagaattcctaaatcccaagaatccatgttccttagacttgttcatactatccaacacaccctccac 5390808  T

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Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 199 - 322
Target Start/End: Original strand, 5399404 - 5399527
Alignment:
Q  199 atcatggcacaatcttgtagactttagtcttgtcaatcgaactaatgaaagaattcttagaattcctaaatcccaagaatccatgttctttagccttgtt 298  Q
    |||||||||||||||||||  |||| ||||| |||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| |||| ||||||    
T  5399404 atcatggcacaatcttgtaagcttttgtcttatcaatccaactaatgaacgaattcttagaattcctaaatcctaagaatccatgttccttagacttgtt 5399503  T
Q  299 catactatccaacacaccctccac 322  Q
    ||||||||||||||||||||||||    
T  5399504 catactatccaacacaccctccac 5399527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 196 - 321
Target Start/End: Original strand, 5394220 - 5394345
Alignment:
Q  196 atcatcatggcacaatcttgtagactttagtcttgtcaatcgaactaatgaaagaattcttagaattcctaaatcccaagaatccatgttctttagcctt 295  Q
    ||||||||||||||||||||||  |||| |||||||||||| |||||||||| ||||||||||||||||||||||| | |||||||||||| ||||| ||    
T  5394220 atcatcatggcacaatcttgtaagcttttgtcttgtcaatccaactaatgaatgaattcttagaattcctaaatcctatgaatccatgttccttagcttt 5394319  T
Q  296 gttcatactatccaacacaccctcca 321  Q
    |||||||  |||||||||||||||||    
T  5394320 gttcatagaatccaacacaccctcca 5394345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 5390482 - 5390557
Alignment:
Q  2 cagagatggaaagaagttaagagaattaagaaatagtgaaagttagaaaattaccaacaagtgaacattattcttt 77  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5390482 cagaggtgtaaagaagttaagagaattaagaaatagtgaaagttagaaaattaccaacaagtgaacattattcttt 5390557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 5394056 - 5394118
Alignment:
Q  12 aagaagttaagagaattaagaaatagtgaaagttagaaaattacc-aacaagtgaacattatt 73  Q
    |||||||||||||||||||||||||| ||||||  ||| |||||| |||||||||||||||||    
T  5394056 aagaagttaagagaattaagaaatagcgaaagtgtgaacattaccaaacaagtgaacattatt 5394118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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