View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3863_low_38 (Length: 300)
Name: NF3863_low_38
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3863_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 29946411 - 29946122
Alignment:
| Q |
1 |
atttgacaacactttttattaatcccgtgttgcataataaaagtggtttgttcaaattatgttaagctatagccgctattttgacaacattgattcgaag |
100 |
Q |
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| T |
29946411 |
atttggcaacactttttattaatcccgtgttgcataataaaagtggtttgttcaaattatgttaagctatagccgctattttgacaacattgattcgaag |
29946312 |
T |
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| Q |
101 |
tcgctgcagttattttcttttaactttgtatcagtgtaggatatgt-ttttatatattgctgatttgagttccgaatttgtagtgttccacagctgaaga |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29946311 |
tcgctgcagttattttcttttaactttgtatcagtgtaggatatgttttttatatattgctgatttgagttcaaaatttgtagtgttccacagctgaaga |
29946212 |
T |
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| Q |
200 |
ctgtcgttcagttacttgcaaatatggaaagcagccagcttagttcactatcccgaacccatgttcttgagaaggtatggatatgatgat |
289 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29946211 |
ctgtcgttcagttacttgcaaatatggaaagtagccagcttagttcactatcccgaacccatgttcttgagaaggtatggatatgatgat |
29946122 |
T |
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