View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3863_low_40 (Length: 295)
Name: NF3863_low_40
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3863_low_40 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 23 - 273
Target Start/End: Complemental strand, 2223348 - 2223098
Alignment:
| Q |
23 |
agccgccgtcgaacccacggtattcccatcaacctcatcaccacaacttccaccgactccaatttcactatccattttcataaaacaagaacacatagct |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2223348 |
agccgccgtcgaacccacggtattcccatcaacctcatcaccacaacttccaccgactccaatttcactatccatcttcataaaacaagaacacatagct |
2223249 |
T |
|
| Q |
123 |
tcacaccaatccaatccatgattcctcctaccctccttcacttcctccgccaacaacaagtgcagcctatcacggcaagcattcgccaccgtcataccac |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2223248 |
tcacaccaatccaatccatgattcctcctaccctccttcacttcctccgccaacaacaagtgcaacctatcacggcaagcattcgccaccgtcataccac |
2223149 |
T |
|
| Q |
223 |
catgaccgtcataaaccgcaaagaaatcataaccgcacagttgctgctccg |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2223148 |
catgaccgtcataaaccgcaaagaaatcataaccgcacggttgctgctccg |
2223098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University