View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3863_low_42 (Length: 279)
Name: NF3863_low_42
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3863_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 171
Target Start/End: Complemental strand, 32216463 - 32216311
Alignment:
| Q |
19 |
atgaagtccatattacttgaggtaattctatctcaaattccaaaggcaattcaatggtttattctccttgaagaaccaaagaaatgaaatgcaagatctt |
118 |
Q |
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| T |
32216463 |
atgaagtccagactacttgaggtaattctatctcaaattccaaaggcaattcaaaggtttattctccttgaagaaccaaagaaatgaaatgcaagatctt |
32216364 |
T |
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| Q |
119 |
attacgaaaactcacgcacgaggtgcattatactctatgtgacgcacatattg |
171 |
Q |
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| T |
32216363 |
tttacgaaaactcacgcacgaggtgcattatactctatgtgacgcacatattg |
32216311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 32225734 - 32225604
Alignment:
| Q |
19 |
atgaagtccatattacttgaggtaattctatctcaaattccaaaggcaattcaatggtttattctccttgaagaaccaaagaaatgaaatgcaagatctt |
118 |
Q |
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|||||||||| | |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32225734 |
atgaagtccagactacttgaggtaattctatctcaaattccaaaggcaagtcaaaagtttattctccttgaagaaccaaataaatgaaatgcaagatctt |
32225635 |
T |
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| Q |
119 |
attacgaaaactcacgcacgaggtgcattat |
149 |
Q |
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| T |
32225634 |
tttacgaaaactaacgcacgaggtgcattat |
32225604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 164 - 270
Target Start/End: Complemental strand, 32213703 - 32213597
Alignment:
| Q |
164 |
acatattgcaccatcaaaaaggtttctacttttggtagacacgagtaccagcttgcgcgatgcacacatcaaccaatcaagaactgccaagtaagcttaa |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32213703 |
acatattgcaccatcaaaaaggtttctacttttggtagacacgcgtaccagcatgcgcgatgcacacatcaaccaatcaagaactgccaagtcagcttaa |
32213604 |
T |
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| Q |
264 |
gtataat |
270 |
Q |
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||||||| |
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| T |
32213603 |
gtataat |
32213597 |
T |
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