View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3863_low_44 (Length: 267)

Name: NF3863_low_44
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3863_low_44
NF3863_low_44
[»] chr1 (11 HSPs)
chr1 (11-249)||(23896119-23896360)
chr1 (118-249)||(24629193-24629324)
chr1 (120-249)||(25610948-25611077)
chr1 (52-234)||(24626769-24626961)
chr1 (31-249)||(24512904-24513125)
chr1 (120-234)||(24242854-24242968)
chr1 (122-232)||(24246496-24246606)
chr1 (116-243)||(25478801-25478928)
chr1 (71-249)||(24221978-24222156)
chr1 (123-232)||(24634804-24634912)
chr1 (178-211)||(45692910-45692943)
[»] chr4 (1 HSPs)
chr4 (118-249)||(11032848-11032979)
[»] chr7 (1 HSPs)
chr7 (179-249)||(1421151-1421221)
[»] scaffold0015 (2 HSPs)
scaffold0015 (172-249)||(32311-32388)
scaffold0015 (172-249)||(40363-40440)
[»] chr5 (5 HSPs)
chr5 (134-232)||(3181671-3181769)
chr5 (179-230)||(11081812-11081863)
chr5 (179-230)||(23766863-23766914)
chr5 (179-230)||(23816711-23816762)
chr5 (180-221)||(20292995-20293036)
[»] chr3 (18 HSPs)
chr3 (179-230)||(2696733-2696784)
chr3 (179-230)||(4142135-4142186)
chr3 (179-230)||(4157945-4157996)
chr3 (178-230)||(3754598-3754650)
chr3 (180-230)||(7324432-7324482)
chr3 (180-221)||(13498224-13498265)
chr3 (182-221)||(2459277-2459316)
chr3 (179-221)||(803228-803270)
chr3 (180-230)||(956381-956431)
chr3 (180-230)||(1437996-1438045)
chr3 (180-230)||(2456249-2456299)
chr3 (180-230)||(7334240-7334290)
chr3 (180-230)||(7942485-7942535)
chr3 (181-242)||(768318-768379)
chr3 (181-230)||(2631358-2631407)
chr3 (180-221)||(43991960-43992001)
chr3 (182-230)||(23230983-23231031)
chr3 (174-230)||(37753346-37753402)
[»] chr2 (2 HSPs)
chr2 (180-230)||(36577366-36577416)
chr2 (180-245)||(7156178-7156243)
[»] chr6 (3 HSPs)
chr6 (182-245)||(19119065-19119128)
chr6 (182-245)||(19126359-19126422)
chr6 (178-247)||(17368364-17368433)
[»] scaffold0044 (1 HSPs)
scaffold0044 (178-230)||(89141-89193)


Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 23896360 - 23896119
Alignment:
Q  11 ttattctagtgttgtgtctcg---taatttctcgagtgtcgttgtttcacttgatttagaaaaagagtgttacaaagagattccacaacctaactatgga 107  Q
    |||||||| ||||||||||||   |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  23896360 ttattctaatgttgtgtctcgaggtaatttctcgagtgtcattgtttcacttgatttagaaaaagagtgttaccaagagattcaacaacctaactatgga 23896261  T
Q  108 attatagataacttgaccttgggtatgatgagggattgcctgtgcgtatttgctaattcttacccttttattgatgtttggcttatgaaggaatacggaa 207  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  23896260 attatagataagttgaccttgggtatgatgagggattgcctgtgcgtatttgctaattcttactcttttattgatgtttggcttatgaaggaatatggaa 23896161  T
Q  208 ataaagagtcttgggttaaattgattcatgttccttactttg 249  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  23896160 ataaagagtcttgggttaaatttattcatgttccttactttg 23896119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 118 - 249
Target Start/End: Complemental strand, 24629324 - 24629193
Alignment:
Q  118 acttgaccttgggtatgatgagggattgcctgtgcgtatttgctaattcttacccttttattgatgtttggcttatgaaggaatacggaaataaagagtc 217  Q
    ||||||||||||||||||||||||||||||||||  ||||| |  ||||| ||  |||||  ||||||||||||||||||||||||||||||||||||||    
T  24629324 acttgaccttgggtatgatgagggattgcctgtgtatattttcgtattctcacttttttacagatgtttggcttatgaaggaatacggaaataaagagtc 24629225  T
Q  218 ttgggttaaattgattcatgttccttactttg 249  Q
    |||| ||||||| || ||| ||||||||||||    
T  24629224 ttggattaaattcatccatcttccttactttg 24629193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 120 - 249
Target Start/End: Complemental strand, 25611077 - 25610948
Alignment:
Q  120 ttgaccttgggtatgatgagggattgcctgtgcgtatttgctaattcttacccttttattgatgtttggcttatgaaggaatacggaaataaagagtctt 219  Q
    |||| ||||||| ||||||| |||||  ||||| ||||| || ||||| |||| |||  |||||||||||| |||| |||||||||||||||||| ||||    
T  25611077 ttgaacttgggtgtgatgagagattgtttgtgcatattttcttattctcacccattttatgatgtttggctaatgacggaatacggaaataaagaatctt 25610978  T
Q  220 gggttaaattgattcatgttccttactttg 249  Q
    ||||||||||||||||| ||||||||||||    
T  25610977 gggttaaattgattcatcttccttactttg 25610948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 234
Target Start/End: Complemental strand, 24626961 - 24626769
Alignment:
Q  52 tttcacttgatttaga-aaaagagtgttacaaagagattccacaacctaactatggaattatagataacttgaccttgggtatgatgagggattgcctgt 150  Q
    |||| |||||||| || |||||||||||||||||| ||| |||||||||||||||||||    ||||| ||||| || |||||||||||||||||  |||    
T  24626961 tttctcttgatttggagaaaagagtgttacaaagaaatttcacaacctaactatggaatgcccgataaattgactttcggtatgatgagggattggttgt 24626862  T
Q  151 gcgtatttgctaattc-------ttacc--cttttattgatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattgattc 234  Q
    |  ||||| || ||||       || |   ||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  24626861 gtatattttctcattcgcggtctttgcggtcttttatcgatgtttggcttatgaaggaatacagaattaaagagtcttgggttaaattgattc 24626769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 31 - 249
Target Start/End: Original strand, 24512904 - 24513125
Alignment:
Q  31 gtaatttctcgagtgtcgttgtttcacttgatttagaaaaagagtgttacaaagagattccacaacctaactatg---gaattatagataacttgacctt 127  Q
    ||||||| ||| ||| | ||||||| |||||||| |  |||||||||||| |||||||| || ||||||||||||   ||||    | | | || |||||    
T  24512904 gtaatttatcgcgtgccattgtttctcttgatttggggaaagagtgttaccaagagatttcagaacctaactatgatggaatgccggtttattttacctt 24513003  T
Q  128 gggtatgatgagggattgcctgtgcgtatttgctaattcttacccttttattgatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaa 227  Q
    ||||||||| || |||||  ||||| ||| | || ||||| || |||| | |||||||||||||||||| ||||| |||| ||||||||| ||| |||||    
T  24513004 gggtatgataagagattgtttgtgcatatgttctcattctaactctttcaatgatgtttggcttatgaaagaatatggaagtaaagagtcatggattaaa 24513103  T
Q  228 ttgattcatgttccttactttg 249  Q
    ||||| ||| ||||||||||||    
T  24513104 ttgatccatcttccttactttg 24513125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 234
Target Start/End: Complemental strand, 24242968 - 24242854
Alignment:
Q  120 ttgaccttgggtatgatgagggattgcctgtgcgtatttgctaattcttacccttttattgatgtttggcttatgaaggaatacggaaataaagagtctt 219  Q
    |||||| ||||| ||||| |||||| | ||||| ||||| || ||||| || |||||| |||||||||||||||||||  ||||||||||||||||||||    
T  24242968 ttgaccatgggtgtgatgcgggatttcttgtgcctattttcttattctgactcttttactgatgtttggcttatgaagatatacggaaataaagagtctt 24242869  T
Q  220 gggttaaattgattc 234  Q
    || ||||||| ||||    
T  24242868 ggattaaattaattc 24242854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 232
Target Start/End: Complemental strand, 24246606 - 24246496
Alignment:
Q  122 gaccttgggtatgatgagggattgcctgtgcgtatttgctaattcttacccttttattgatgtttggcttatgaaggaatacggaaataaagagtcttgg 221  Q
    ||||||||||||||| ||||||||| ||||| ||||| || ||||  |   ||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  24246606 gaccttgggtatgataagggattgcttgtgcatattttctcattcagaatattttactgatgtttggcttatgaaagaatacggaaataaagagtcttgg 24246507  T
Q  222 gttaaattgat 232  Q
     | ||||||||    
T  24246506 atgaaattgat 24246496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 116 - 243
Target Start/End: Original strand, 25478801 - 25478928
Alignment:
Q  116 taacttgaccttgggtatgatgagggattgcctgtgcgtatttgctaattcttacccttttattgatgtttggcttatgaaggaatacggaaataaagag 215  Q
    ||||||||| |||||||| |||| ||||||  |||| |||||| ||   ||| || | || ||||||||||||||||||||||||||||| ||||||||     
T  25478801 taacttgacgttgggtatcatgaaggattgtttgtgtgtattttcttgctctgactcattgattgatgtttggcttatgaaggaatacggtaataaagaa 25478900  T
Q  216 tcttgggttaaattgattcatgttcctt 243  Q
    |||||| |||||||||| ||| ||||||    
T  25478901 tcttggattaaattgatccatcttcctt 25478928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 249
Target Start/End: Complemental strand, 24222156 - 24221978
Alignment:
Q  71 agagtgttacaaagagattccacaacctaactatggaattatagataacttgaccttgggtatgatgagggattgcctgtgcgtatttgctaattcttac 170  Q
    ||||| ||||||||||||| | |||||| | ||||||||  | | ||| |||||| || ||||| ||||||||||  ||||| || || || ||||  ||    
T  24222156 agagtcttacaaagagatttcgcaacctgattatggaatgtttgttaagttgaccatgtgtatgctgagggattgtttgtgcatagtttctcattccgac 24222057  T
Q  171 ccttttattgatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattgattcatgttccttactttg 249  Q
     | |||| ||||||||||||| ||| ||| |||| |||| |||| ||||||||||| ||||| | | ||||||||||||    
T  24222056 tcatttaatgatgtttggcttttgatggattacgaaaatcaagaatcttgggttaagttgatccgtcttccttactttg 24221978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 232
Target Start/End: Complemental strand, 24634912 - 24634804
Alignment:
Q  123 accttgggtatgatgagggattgcctgtgcgtatttgctaattcttacccttttattgatgtttggcttatgaaggaatacggaaataaagagtcttggg 222  Q
    |||||||||||||| |||||||   ||||| ||| | || ||||| || ||| || ||||||||||||||||||||||||||||| ||||||||||| |     
T  24634912 accttgggtatgataagggatttt-tgtgcatatgttctcattctgactcttctaatgatgtttggcttatgaaggaatacggaattaaagagtcttaga 24634814  T
Q  223 ttaaattgat 232  Q
    || |||||||    
T  24634813 ttgaattgat 24634804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 211
Target Start/End: Complemental strand, 45692943 - 45692910
Alignment:
Q  178 ttgatgtttggcttatgaaggaatacggaaataa 211  Q
    ||||||||||||||||||||||||||||| ||||    
T  45692943 ttgatgtttggcttatgaaggaatacggatataa 45692910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 118 - 249
Target Start/End: Original strand, 11032848 - 11032979
Alignment:
Q  118 acttgaccttgggtatgatgagggattgcctgtgcgtatttgctaattcttacccttttattgatgtttggcttatgaaggaatacggaaataaagagtc 217  Q
    ||||||||||||||||||||||||||||||||||  ||||| |  ||||| || ||||||  ||||||||||| ||||||||||||||||||||||||||    
T  11032848 acttgaccttgggtatgatgagggattgcctgtgtatattttcatattctcactcttttaccgatgtttggctcatgaaggaatacggaaataaagagtc 11032947  T
Q  218 ttgggttaaattgattcatgttccttactttg 249  Q
    |||| |||||||||| ||| ||||||||||||    
T  11032948 ttggattaaattgatccatcttccttactttg 11032979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 179 - 249
Target Start/End: Complemental strand, 1421221 - 1421151
Alignment:
Q  179 tgatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattgattcatgttccttactttg 249  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  1421221 tgatgtttggcttatgaaggaatacggaaataaagagtcttggattaaattgattcatcttccttactttg 1421151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 172 - 249
Target Start/End: Complemental strand, 32388 - 32311
Alignment:
Q  172 cttttattgatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattgattcatgttccttactttg 249  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||| | |||||| |||||    
T  32388 cttttattgatgtttggcttatgaaggaatatggaaataaagactcttggattaaattgattcgtcttccttcctttg 32311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 172 - 249
Target Start/End: Complemental strand, 40440 - 40363
Alignment:
Q  172 cttttattgatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattgattcatgttccttactttg 249  Q
    |||||| |||||||||||||||||||||||| | ||||||||| |||||| |||||||||||| | |||||| |||||    
T  40440 cttttactgatgtttggcttatgaaggaatatgaaaataaagactcttggattaaattgattcgtcttccttcctttg 40363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 232
Target Start/End: Original strand, 3181671 - 3181769
Alignment:
Q  134 gatgagggattgcctgtgcgtatttgctaattcttacccttttattgatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattgat 232  Q
    ||||||||| ||  |||| |||||| || ||||  || |||||  |||||||||||||||||||||||| |||||| ||||||||||| ||||||||||    
T  3181671 gatgagggaatgtttgtgtgtattttctcattccgactcttttgatgatgtttggcttatgaaggaatatggaaatgaagagtcttggattaaattgat 3181769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 11081812 - 11081863
Alignment:
Q  179 tgatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattg 230  Q
    |||||||||| |||||||||| || ||||||||||||||||||  |||||||    
T  11081812 tgatgtttgggttatgaaggagtatggaaataaagagtcttggactaaattg 11081863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 23766914 - 23766863
Alignment:
Q  179 tgatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattg 230  Q
    |||||||||| ||||||| ||||| ||||||||||||||||||  |||||||    
T  23766914 tgatgtttggattatgaaagaatatggaaataaagagtcttggactaaattg 23766863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 23816762 - 23816711
Alignment:
Q  179 tgatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattg 230  Q
    |||||||||| ||||||| ||||| ||||||||||||||||||  |||||||    
T  23816762 tgatgtttggattatgaaagaatatggaaataaagagtcttggactaaattg 23816711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 20292995 - 20293036
Alignment:
Q  180 gatgtttggcttatgaaggaatacggaaataaagagtcttgg 221  Q
    ||||||||| ||||||||||||| |||| |||||||||||||    
T  20292995 gatgtttggattatgaaggaatatggaattaaagagtcttgg 20293036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 2696784 - 2696733
Alignment:
Q  179 tgatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattg 230  Q
    |||||||||| ||||||||||||| |||||||||||||||||| ||||||||    
T  2696784 tgatgtttggattatgaaggaatatggaaataaagagtcttggattaaattg 2696733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 4142186 - 4142135
Alignment:
Q  179 tgatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattg 230  Q
    |||||||||||||||||||||||| ||||||||||||||||||  |||||||    
T  4142186 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattg 4142135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 4157996 - 4157945
Alignment:
Q  179 tgatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattg 230  Q
    |||||||||||||||||||||||| ||||||||||||||||||  |||||||    
T  4157996 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattg 4157945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 3754598 - 3754650
Alignment:
Q  178 ttgatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattg 230  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||  |||||||    
T  3754598 ttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaattg 3754650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 7324482 - 7324432
Alignment:
Q  180 gatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattg 230  Q
    ||||||||| |||||||||| |||||||||||||||||||||  |||||||    
T  7324482 gatgtttggattatgaaggactacggaaataaagagtcttggactaaattg 7324432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 13498224 - 13498265
Alignment:
Q  180 gatgtttggcttatgaaggaatacggaaataaagagtcttgg 221  Q
    ||||||||| ||||||||||||| ||||||||||||||||||    
T  13498224 gatgtttggattatgaaggaatatggaaataaagagtcttgg 13498265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 2459277 - 2459316
Alignment:
Q  182 tgtttggcttatgaaggaatacggaaataaagagtcttgg 221  Q
    ||||||| ||||||||||||| ||||||||||||||||||    
T  2459277 tgtttggattatgaaggaatatggaaataaagagtcttgg 2459316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 221
Target Start/End: Complemental strand, 803270 - 803228
Alignment:
Q  179 tgatgtttggcttatgaaggaatacggaaataaagagtcttgg 221  Q
    |||||||||| ||||||| ||||| ||||||||||||||||||    
T  803270 tgatgtttgggttatgaaagaatatggaaataaagagtcttgg 803228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 956381 - 956431
Alignment:
Q  180 gatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattg 230  Q
    ||||||||| ||||||||||||| ||||| ||||||||||||  |||||||    
T  956381 gatgtttggattatgaaggaatatggaaaaaaagagtcttggcataaattg 956431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 1437996 - 1438045
Alignment:
Q  180 gatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattg 230  Q
    ||||||||| ||||||||||||| ||||||||||| |||||| ||||||||    
T  1437996 gatgtttgg-ttatgaaggaatatggaaataaagactcttggattaaattg 1438045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 2456249 - 2456299
Alignment:
Q  180 gatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattg 230  Q
    ||||||||| ||||||||||||| ||||||||||| ||||||  |||||||    
T  2456249 gatgtttgggttatgaaggaatatggaaataaagactcttggactaaattg 2456299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 7334290 - 7334240
Alignment:
Q  180 gatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattg 230  Q
    ||||||||| | |||||||| |||||||||||||||||||||  |||||||    
T  7334290 gatgtttggatcatgaaggactacggaaataaagagtcttggactaaattg 7334240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 7942485 - 7942535
Alignment:
Q  180 gatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattg 230  Q
    ||||||||| |||||||||| || || ||||||||||||||| ||||||||    
T  7942485 gatgtttggattatgaaggagtatggtaataaagagtcttggattaaattg 7942535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 768379 - 768318
Alignment:
Q  181 atgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattgattcatgttcct 242  Q
    |||||||| ||||||| || ||||||||| |||||||||||  ||||||| | |||||||||    
T  768379 atgtttggattatgaatgagtacggaaatgaagagtcttggactaaattgttccatgttcct 768318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 2631358 - 2631407
Alignment:
Q  181 atgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattg 230  Q
    |||||||| ||||||||||||| |||||| |||||||||||  |||||||    
T  2631358 atgtttggattatgaaggaatatggaaatcaagagtcttggactaaattg 2631407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 43991960 - 43992001
Alignment:
Q  180 gatgtttggcttatgaaggaatacggaaataaagagtcttgg 221  Q
    ||||||||| ||||||||||||| ||||||| ||||||||||    
T  43991960 gatgtttggattatgaaggaatatggaaatatagagtcttgg 43992001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 23231031 - 23230983
Alignment:
Q  182 tgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattg 230  Q
    ||||||||| ||||| ||||| |||||| ||||||||||| ||||||||    
T  23231031 tgtttggctaatgaaagaatatggaaatgaagagtcttggattaaattg 23230983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 37753402 - 37753346
Alignment:
Q  174 tttattgatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattg 230  Q
    ||||| ||||||||| ||||| ||||||| ||||| ||||||||||||  |||||||    
T  37753402 tttatggatgtttggattatggaggaatatggaaagaaagagtcttggactaaattg 37753346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 36577366 - 36577416
Alignment:
Q  180 gatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattg 230  Q
    ||||||||| ||||||||||||| |||||||||||||||||| ||||||||    
T  36577366 gatgtttggattatgaaggaatatggaaataaagagtcttggattaaattg 36577416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 7156243 - 7156178
Alignment:
Q  180 gatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattgattcatgttccttac 245  Q
    |||||||||||||||||||| || |||||| |||| ||||||| ||||||| | | ||||||||||    
T  7156243 gatgtttggcttatgaaggagtatggaaatgaagattcttgggctaaattgttccgtgttccttac 7156178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 19119065 - 19119128
Alignment:
Q  182 tgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattgattcatgttccttac 245  Q
    ||||||| | ||||||||||| |||||| |||||||||||  ||||||| ||||||||||||||    
T  19119065 tgtttggttgatgaaggaatatggaaatgaagagtcttggactaaattgtttcatgttccttac 19119128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 19126359 - 19126422
Alignment:
Q  182 tgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattgattcatgttccttac 245  Q
    ||||||| | ||||||||||| |||||| |||||||||||  ||||||| ||||||||||||||    
T  19126359 tgtttggttgatgaaggaatatggaaatgaagagtcttggactaaattgtttcatgttccttac 19126422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 17368364 - 17368433
Alignment:
Q  178 ttgatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattgattcatgttccttactt 247  Q
    ||||||||||||| ||||| || || |||||| ||| |||||||  ||||||| ||||||||||||||||    
T  17368364 ttgatgtttggctgatgaaagagtatggaaatgaagggtcttggactaaattgtttcatgttccttactt 17368433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 89141 - 89193
Alignment:
Q  178 ttgatgtttggcttatgaaggaatacggaaataaagagtcttgggttaaattg 230  Q
    ||||| ||||| ||||||||||||| ||||||||||||||||||  |||||||    
T  89141 ttgatatttgggttatgaaggaatatggaaataaagagtcttggactaaattg 89193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University