View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3863_low_47 (Length: 257)
Name: NF3863_low_47
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3863_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 2181479 - 2181730
Alignment:
| Q |
1 |
agagagacaaccatctgcagcaacaagtaaatctcctacaatctcaataacctctccagttttcacaactttagcctttactatgacaggacccttttca |
100 |
Q |
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| T |
2181479 |
agagagacaaccatctgcagcaacaagcaaatctcctacaatctcaataacctctccagttttcacaactttagcctttactatgacaggacccttttca |
2181578 |
T |
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| Q |
101 |
tttgcaacatggaaagaaagaaaaatatgaccccataaaaatatttgtggtggaagtgattcatagagaacaccatgaagatcaccccaatgtgctgctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2181579 |
tttgcaacatggaaagaaagaaaaatatgaccccataaaaatatttgtggtggaagtgattcatagagaacaccatgaagatcaccccaatgtgctgctc |
2181678 |
T |
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| Q |
201 |
tgaagtttaaactttcatctcttgtcaatgtcctattaaccttcatctcact |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2181679 |
tgaagtttaaactttcatctcttgtcaatgtcctattaaccttcttctcact |
2181730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 2184795 - 2184541
Alignment:
| Q |
1 |
agagagacaaccatctgcagcaacaagtaaatctcctacaatctcaataacctctccagttttcacaactttagcctttactatgacagga---cccttt |
97 |
Q |
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|||||||||||||||||| |||||||| ||||| |||||||||||||| | ||||||||||| | |||| |||||||||| ||||||| | |||||| |
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| T |
2184795 |
agagagacaaccatctgctgcaacaagcaaatcccctacaatctcaatgatctctccagtttgaagaactatagcctttacaatgacagaagttcccttt |
2184696 |
T |
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| Q |
98 |
tcatttgcaacatggaaagaaagaaaaatatgaccccataaaaatatttgtggtggaagtgattcatagagaacaccatgaagatcaccccaatgtgctg |
197 |
Q |
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|||||||||||||||||||| | |||| ||||||||||||||||| ||||||||| | || |||||||||||| ||||||||||| || ||||| ||| |
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| T |
2184695 |
tcatttgcaacatggaaagagacaaaatgatgaccccataaaaatacttgtggtggcaatgcatcatagagaacaacatgaagatcagcctaatgtactg |
2184596 |
T |
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| Q |
198 |
ctctgaagtttaaactttcatctcttgtcaatgtcctattaaccttcatctcact |
252 |
Q |
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|| | ||||| ||||| ||||||||| ||||||||| ||| |||||| ||||||| |
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| T |
2184595 |
ctgtcaagttgaaactctcatctcttatcaatgtccaattcaccttcttctcact |
2184541 |
T |
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