View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3863_low_49 (Length: 254)
Name: NF3863_low_49
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3863_low_49 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 9527580 - 9527827
Alignment:
| Q |
1 |
ctttcttggccagcagtatcccagatctgagctttaattactttaccattaatagtgacagtcctagtttgaaattcaacaccaatagttgactttgagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9527580 |
ctttcttggccagcagtatcccagatctgagctttaattactttaccattaatagtgacagtcctagtttgaaattcaacaccaatagttgactttgagt |
9527679 |
T |
|
| Q |
101 |
caaagcaaaactcattctttgaaaaccttgatagtatttgagtctttcctactgctgagtcaccaatgacaacaaccttaaacacataatctattttctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9527680 |
caaagcaaaactcattctttgaaaaccttgatagtatttgagtctttcctactgctgagtcaccaatgacaacaaccttaaacacataatctattttctc |
9527779 |
T |
|
| Q |
201 |
gtccatatcataatctattttcttgtgtccattttcttgcttcatctc |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9527780 |
ttccatatcataatctattttcttgtgtccattttcttgcttcttctc |
9527827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 48931892 - 48931694
Alignment:
| Q |
1 |
ctttcttggccagcagtatcccagatctgagctttaattactttaccattaatagtgacagtcctagtttgaaattcaacaccaatagttgactttgagt |
100 |
Q |
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||||||||||||||||||||||||||||||||||| || | |||||||||||| |||||||| ||||| ||||||||||| ||||| ||||| ||||||| |
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| T |
48931892 |
ctttcttggccagcagtatcccagatctgagctttgatgagtttaccattaattgtgacagttctagtctgaaattcaactccaatggttgattttgagt |
48931793 |
T |
|
| Q |
101 |
caaagcaaaactcattctttgaaaaccttgatagtatttgagtctttcctactgctgagtcaccaatgacaacaaccttaaacacataatctattttct |
199 |
Q |
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||||||| ||||||||||||| ||||||||| || |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
48931792 |
caaagcagaactcattctttgcaaaccttgacagcatttgagtctttcctactgccgagtcaccaatcacaaccaccttaaacacataatctattttct |
48931694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 18233851 - 18233899
Alignment:
| Q |
1 |
ctttcttggccagcagtatcccagatctgagctttaattactttaccat |
49 |
Q |
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|||||||| |||||||||||||||||||| ||||| | | ||||||||| |
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| T |
18233851 |
ctttcttgtccagcagtatcccagatctgtgctttcacttctttaccat |
18233899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 31789576 - 31789532
Alignment:
| Q |
1 |
ctttcttggccagcagtatcccagatctgagctttaattacttta |
45 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||| |||||| |
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| T |
31789576 |
ctttcttgaccagcagtatcccagatctgagccttaataacttta |
31789532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 35195829 - 35195785
Alignment:
| Q |
1 |
ctttcttggccagcagtatcccagatctgagctttaattacttta |
45 |
Q |
| |
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|||||||| |||||||||||||| |||||||| ||||| |||||| |
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| T |
35195829 |
ctttcttgaccagcagtatcccaaatctgagccttaatgacttta |
35195785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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