View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3863_low_51 (Length: 251)
Name: NF3863_low_51
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3863_low_51 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 5 - 251
Target Start/End: Original strand, 38663958 - 38664202
Alignment:
| Q |
5 |
gaggagcacagatgtaataaataaaaggaaaatgctaacaaatgctcttacgcatcctaaaacagtaaacttttacatatgaaattgtgaggttatgact |
104 |
Q |
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| T |
38663958 |
gaggaacacacatgtaataaataaaaggaaaatgctaacaaatgctcttacgcatcctaaaacagtaa-cttttacatatgaaattgtgaggttatgact |
38664056 |
T |
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| Q |
105 |
tttacatgtgtttcaattttgggttccttaaataatatctttaagacacttgttagcaagaccctaaggaaataaaggaaaagacaatgaaagatgaaga |
204 |
Q |
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| T |
38664057 |
tttacatgtgttttaattttgggttccttaaataatatccttaagacacttgttagcaagaccctaaggaaataaaggaaaagacaatgagagatgaa-a |
38664155 |
T |
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| Q |
205 |
gnnnnnnnnttagatgtgcaaaaggaaataaaataggatgccatttt |
251 |
Q |
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| T |
38664156 |
aaaaaaaaattggatgtgcaaaaggaaataaaataggatgccatttt |
38664202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 171
Target Start/End: Original strand, 46826882 - 46826921
Alignment:
| Q |
132 |
ttaaataatatctttaagacacttgttagcaagaccctaa |
171 |
Q |
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| T |
46826882 |
ttaaataatatctttaggacacttgttagcaagaccctaa |
46826921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 169
Target Start/End: Complemental strand, 46737443 - 46737401
Alignment:
| Q |
127 |
gttccttaaataatatctttaagacacttgttagcaagaccct |
169 |
Q |
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| T |
46737443 |
gttccttaaacaatgtccttaagacacttgttagcaagaccct |
46737401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 9673435 - 9673479
Alignment:
| Q |
123 |
ttgggttccttaaataatatctttaagacacttgttagcaagacc |
167 |
Q |
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| T |
9673435 |
ttgggttccttaaataatgtttttaaaacacttgttagcaagacc |
9673479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 171
Target Start/End: Original strand, 33134292 - 33134339
Alignment:
| Q |
124 |
tgggttccttaaataatatctttaagacacttgttagcaagaccctaa |
171 |
Q |
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| T |
33134292 |
tgggttccttaaacaatgcctttaagacacttgttaacaagaccctaa |
33134339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 165
Target Start/End: Original strand, 48650414 - 48650452
Alignment:
| Q |
127 |
gttccttaaataatatctttaagacacttgttagcaaga |
165 |
Q |
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| T |
48650414 |
gttccttaaataatacatttaagacacttgttagcaaga |
48650452 |
T |
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