View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3863_low_52 (Length: 250)
Name: NF3863_low_52
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3863_low_52 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 14148003 - 14147765
Alignment:
| Q |
1 |
caatggtaagaaacataaggccaaaaattagtaagaagtccactccagaggttagaatcccattacatgcattcccaaattactctacaaggttataata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14148003 |
caatggtaagaaacataaggccaaaaattagtaagaagtccactccagaggttagaatcccattacatgcatccccaaattactctacaaggttataata |
14147904 |
T |
|
| Q |
101 |
tccaaaagcagttaaggaatatcgctctcaaatcataccaagaacaagccattcaagctactgtttgacgcaatgtagtcgcataaaacactgaacatgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14147903 |
tccaaaagcagttaaggaatatcgctctcaaatcataccaagaacaagccattcaagctactgtttgacgcaatgtagtcgcataaaacactgaacatgg |
14147804 |
T |
|
| Q |
201 |
acaacatctgatatttaaacatgactcaaccaaattcat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14147803 |
acaacatctgatatttaaacatgactcaaccaaattcat |
14147765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 97 - 204
Target Start/End: Complemental strand, 14154403 - 14154296
Alignment:
| Q |
97 |
aatatccaaaagcagttaaggaatatcgctctcaaatcataccaagaacaagccattcaagctactgtttgacgcaatgtagtcgcataaaacactgaac |
196 |
Q |
| |
|
|||| |||||||||||| ||||| || |||||||| || || || ||||||||||||||||||| |||| ||| |||||||||||||| || ||||||| |
|
|
| T |
14154403 |
aataaccaaaagcagttgaggaaaatatctctcaaaacacactaaaaacaagccattcaagctaccgtttaacgtaatgtagtcgcatacaatactgaac |
14154304 |
T |
|
| Q |
197 |
atggacaa |
204 |
Q |
| |
|
|||||||| |
|
|
| T |
14154303 |
atggacaa |
14154296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 239
Target Start/End: Complemental strand, 14154269 - 14154231
Alignment:
| Q |
201 |
acaacatctgatatttaaacatgactcaaccaaattcat |
239 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14154269 |
acaacagctgatatttaaacatgactcaaccaaattcat |
14154231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 14496308 - 14496244
Alignment:
| Q |
44 |
tccagaggttagaatcccattacatgcattcccaaattactctacaaggttataatatccaaaag |
108 |
Q |
| |
|
|||||||||| | |||||||||||||| | ||||||| ||||||||||||||||||||||| |
|
|
| T |
14496308 |
tccagaggttgaattcccattacatgcaacacgaaattacaatacaaggttataatatccaaaag |
14496244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University