View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3863_low_54 (Length: 247)
Name: NF3863_low_54
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3863_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 3677740 - 3677616
Alignment:
| Q |
1 |
tcactttttaaaattatttttcttacactagattcaaaatataatacctaaaacccttctaaagtccttggctgtattgatattgaggtaggcgtatttg |
100 |
Q |
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| T |
3677740 |
tcactttttaaaattatttttcttacactagattcaaaatataatacctaaaacccttctaaagtccttggctgtattgatattgaggtaggcgtatttg |
3677641 |
T |
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| Q |
101 |
attgcgtttctacgactctatgaac |
125 |
Q |
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| T |
3677640 |
attgcgtttatacgactctatgaac |
3677616 |
T |
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Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 167 - 240
Target Start/End: Complemental strand, 3677574 - 3677501
Alignment:
| Q |
167 |
attccaagatcaaaccctattatatatgaacatgccttgcttgaagttctatcttctagaagctgtaccctttg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3677574 |
attccaagatcaaaccctattatatatgaacatgccttgcttgaagttctatcttctagaagctgtaccctttg |
3677501 |
T |
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