View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3863_low_56 (Length: 239)
Name: NF3863_low_56
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3863_low_56 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 9527019 - 9527240
Alignment:
| Q |
18 |
aacaataagttctattttttgaaaatgtatttccctttaccattaatgcacacactgaacatttttcaatccatcgtaatctagtcacctaccttttcta |
117 |
Q |
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| T |
9527019 |
aacaataagttctattttttgaaaatgtatttccctttaccattaatgcacacactgaacaattttcaatccattgtaatctagtcacctaccttttcta |
9527118 |
T |
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| Q |
118 |
aagcagggtataatctgctaagaagcaatgcattcatccaaaactgttcactgtctcatacttaaaaccccttccagaacattaatgtgcttctttgtaa |
217 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9527119 |
aagcagggtataatcttctaagaagcaatgcattcatccaaaactgttcactgtctcatacttaaaaccccttccagaacattaatgtgcttctttgtaa |
9527218 |
T |
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| Q |
218 |
tgtatgtttcttacgtcaaaat |
239 |
Q |
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||||| |||||||||||||||| |
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| T |
9527219 |
tgtatttttcttacgtcaaaat |
9527240 |
T |
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