View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3863_low_59 (Length: 237)
Name: NF3863_low_59
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3863_low_59 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 21543692 - 21543912
Alignment:
| Q |
1 |
actatggaatgacacaaaatgatgttatnnnnnnnttaagatcagtagtgttaatattgctggatgacagaaaacaaatctagtgaaagtaggataaaat |
100 |
Q |
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| T |
21543692 |
actatggaatgacacaaaatgatgttataaaaaaattaagataagtagtgttaatattgctggatgacggaaaacaaatctagtgaaagtaggataaaat |
21543791 |
T |
|
| Q |
101 |
tattctatcagcatgacatacatcaaaaccaaaacatgtaaagctcatgtgagacaatattcatccactaaccaccagcaagcttacatatgtaagatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||| |
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| T |
21543792 |
tattctatcagcatgacatacatcaaaaccaaaacatgtaaagctcatgtgagacaatattcatccaccaaccactagcaagcttaaatatgtaagatta |
21543891 |
T |
|
| Q |
201 |
ataaaagaatgtaaagcaaag |
221 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
21543892 |
ataaaagaatgtaaagcaaag |
21543912 |
T |
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