View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3863_low_6 (Length: 597)
Name: NF3863_low_6
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3863_low_6 |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (4 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 553; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 1 - 597
Target Start/End: Original strand, 22607903 - 22608499
Alignment:
| Q |
1 |
tttagtaacaatcgtccggatgaaaggacatacttgtcaggattcacgccattagaaaaaagaaaatcttcaaattccttatctatagattgatcatcac |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22607903 |
tttagtaacaatcgtccagatgaaaggacatacttgtcaggattcacgccattagaaaaaagaaaatcttcaaattccttatctatagattgatcatcac |
22608002 |
T |
|
| Q |
101 |
tgctgtctttaacatacgctgcatatacctgaagatgctcctcgggatttttgaatgcttgtgaatcaagatcatcataggatgaatatgtgtttgcact |
200 |
Q |
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|
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
22608003 |
cgctgtctttaacatactctgcatatacctgaagatgctcctccggatttttgaatgcttgtgaatcaagatcatcataggatgaatatgtatttgcact |
22608102 |
T |
|
| Q |
201 |
atctgcctcaagtttggcttcttcatttatagacatggaagtatcagagtcttcaataaaactattactatctttggcagattcgggttcggatctatca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22608103 |
atctgcctcaagtttggcttcttcatttatagacatggaagtatcagagtcttcaataaaactattactatctttggcagattcgggttcggatctatca |
22608202 |
T |
|
| Q |
301 |
tcgaggaacgcaacatccattctgctattaaccgtgtggttgttcgcacttccaaaaattggactttcatcagacattgatgtatcttctgaagagaaac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22608203 |
tcgaggaacgcaacatccattctgctattaaccgtgtggttgttcgcactaccaaaaattggactttcatcagacattgatgtatcttctgaagagaaac |
22608302 |
T |
|
| Q |
401 |
tctcaacccggcatttatgttttggtctaagcatatctaactgaaaaccctgtaatttccttttcttgttccattcaataatgttgatgtcgtgcatttc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
22608303 |
tctcaacccggcatttatgttttggtctaagcatatctaactgaaaaccctgtaattttcttttcttgttccattcaataatgttgatgtcatgcatttc |
22608402 |
T |
|
| Q |
501 |
atcaacatggaatctggaaacagttttcgaataatgtcagttgaaaggaagaaaaaagataaatcatgacaataatataacaaataatggaatgaac |
597 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22608403 |
atcaacatggaatctggaaacagtttttgaaaaatgtcagttgaaaagaagaaaaaagataaatcatgacaataatataacaaataatggaatgaac |
22608499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 311 - 597
Target Start/End: Original strand, 34902172 - 34902457
Alignment:
| Q |
311 |
caacatccattctgctattaaccgtgtggttgttcgcacttccaaaaattggactttcatcagacattgatgtatcttctgaagagaaactctcaacccg |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
34902172 |
caacatccattctgctattaaccgtgtggttgttcacacttcaaaaaattggacttccatcagatattgatgtatcttctaaagagaaactctcaacccg |
34902271 |
T |
|
| Q |
411 |
gcatttatgttttggtctaagcatatctaactgaaaaccctgtaatttccttttcttgttccattcaataatgttgatgtcgtgcatttcatcaacatgg |
510 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||| ||||| |
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| T |
34902272 |
atattaatgttttggtctaagcatatctaactgaaaaccctgtaattttcttttcttactccattcaataatgttgatgtcatgcatttcatccacatga |
34902371 |
T |
|
| Q |
511 |
aatctggaaacagttttcgaataatgtcagttgaaaggaagaaaaaagataaatcatgacaataatataacaaataatggaatgaac |
597 |
Q |
| |
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||| |||||| |||||||||| | ||| |||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
34902372 |
aatttggaaaaagttttcgaaaattgttagttgaaaagaagaaaaaaga-aaatcatgacaataatataacaaatagtggaatgaac |
34902457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 311 - 597
Target Start/End: Complemental strand, 27690219 - 27689934
Alignment:
| Q |
311 |
caacatccattctgctattaaccgtgtggttgttcgcacttccaaaaattggactttcatcagacattgatgtatcttctgaagagaaactctcaacccg |
410 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||| ||||| ||||||| ||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
27690219 |
caacgtccattctgctattaaccgtgtggttgttcacacttcaaaaaaatggacttccatcagatattgatgtatcttctaaagagaaactctcaacccg |
27690120 |
T |
|
| Q |
411 |
gcatttatgttttggtctaagcatatctaactgaaaaccctgtaatttccttttcttgttccattcaataatgttgatgtcgtgcatttcatcaacatgg |
510 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||| |||||||| || ||||| |
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| T |
27690119 |
atatttatgttttggtctaagcatatctaactgaaaaccttgtaattttcttttcttgcaccattcaataatgttgatgtcatgcatttcttccacatga |
27690020 |
T |
|
| Q |
511 |
aatctggaaacagttttcgaataatgtcagttgaaaggaagaaaaaagataaatcatgacaataatataacaaataatggaatgaac |
597 |
Q |
| |
|
||| ||||||||||||||||| | ||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27690019 |
aatttggaaacagttttcgaaaattgttagttgaaaagaagaaaaaaga-aaatcatgacaataatataacaaataatggaatgaac |
27689934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 311 - 597
Target Start/End: Original strand, 22766026 - 22766311
Alignment:
| Q |
311 |
caacatccattctgctattaaccgtgtggttgttcgcacttccaaaaattggactttcatcagacattgatgtatcttctgaagagaaactctcaacccg |
410 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
22766026 |
caacgtccattctgctattaaccgtgtggttgttcacacttcaaaaaattggacttccatcagatattgatgtatcttctaaagagaaactctcaacccg |
22766125 |
T |
|
| Q |
411 |
gcatttatgttttggtctaagcatatctaactgaaaaccctgtaatttccttttcttgttccattcaataatgttgatgtcgtgcatttcatcaacatgg |
510 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||| |||||| ||||||||| || ||||||||||||||||||| ||||||| ||| ||||| |
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| T |
22766126 |
atatttatgttttggtttaagcatatctaacagaaaaccctataattttcttttcttgctctattcaataatgttgatgtcatgcattttatccacatga |
22766225 |
T |
|
| Q |
511 |
aatctggaaacagttttcgaataatgtcagttgaaaggaagaaaaaagataaatcatgacaataatataacaaataatggaatgaac |
597 |
Q |
| |
|
||| |||||||||||||| || | ||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
22766226 |
aatttggaaacagttttctaaaattgttagttgaaaagaagaaaaaaga-aaatcatgacaataatataacaaataatggaatgaac |
22766311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 311 - 597
Target Start/End: Original strand, 30550774 - 30551059
Alignment:
| Q |
311 |
caacatccattctgctattaaccgtgtggttgttcgcacttccaaaaattggactttcatcagacattgatgtatcttctgaagagaaactctcaacccg |
410 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||| |||||| ||||||||||||| ||||||| ||||||||||| ||| ||||||||||||||||| | |
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|
| T |
30550774 |
caacgtccattctgctgttaaccgtgtggttgttcacacttcaaaaaattggacttccatcagatattgatgtatcctctaaagagaaactctcaacctg |
30550873 |
T |
|
| Q |
411 |
gcatttatgttttggtctaagcatatctaactgaaaaccctgtaatttccttttcttgttccattcaataatgttgatgtcgtgcatttcatcaacatgg |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||| |||||| ||||||||||| ||||| |
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|
| T |
30550874 |
atatttatgttttggtctaagcatatctaactgaaaaccctgtgattttcttttcttgctccattcaataatgtcgatgtcatgcatttcatccacatga |
30550973 |
T |
|
| Q |
511 |
aatctggaaacagttttcgaataatgtcagttgaaaggaagaaaaaagataaatcatgacaataatataacaaataatggaatgaac |
597 |
Q |
| |
|
||| ||||||||||||||||| | | | |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
30550974 |
aatttggaaacagttttcgaaaatttttagttgaaaagaagaaaaaaga-aaatcatgacaataatataacaaataatggaatgaac |
30551059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 311 - 597
Target Start/End: Original strand, 37623772 - 37624046
Alignment:
| Q |
311 |
caacatccattctgctattaaccgtgtggttgttcgcacttccaaaaattggactttcatcagacattgatgtatcttctgaagagaaactctcaacccg |
410 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||| |||||| ||||||||||||| ||| | | ||| ||||||||| | ||||||||||||||||| | |
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|
| T |
37623772 |
caacgtccattctgctgttaaccgtgtggttgttcacacttcaaaaaattggacttccattatatattaatgtatcttataaagagaaactctcaacctg |
37623871 |
T |
|
| Q |
411 |
gcatttatgttttggtctaa-----gcatatctaactgaaaaccctgtaatttccttttcttgttccattcaataatgttgatgtcgtgcatttcatcaa |
505 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||| ||||||| |||||||||||||||||||||| ||||||||||| | |
|
|
| T |
37623872 |
atatttatgttttggtctaatttaagcatatctaattgaa----------------tttcttgatccattcaataatgttgatgtcatgcatttcatcca |
37623955 |
T |
|
| Q |
506 |
catggaatctggaaacagttttcgaataatgtcagttgaaaggaagaaaaaagataaatcatgacaataatataacaaataatggaatgaac |
597 |
Q |
| |
|
|||| ||| | |||||||||||| || | ||| |||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||| |
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|
| T |
37623956 |
catgaaatttagaaacagttttcaaaaattgttagttgaaaagaagaaaaaaga-aaatcatgacaataatatgacaaataatggaatgaac |
37624046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 182; Significance: 4e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 311 - 596
Target Start/End: Original strand, 41295631 - 41295915
Alignment:
| Q |
311 |
caacatccattctgctattaaccgtgtggttgttcgcacttccaaaaattggactttcatcagacattgatgtatcttctgaagagaaactctcaacccg |
410 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||| |||||| ||||||||||||| ||| ||| ||| ||||||||||| ||||||||||||||||| | |
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|
| T |
41295631 |
caacgtccattctgctgttaaccgtgtggttgttcacacttcaaaaaattggacttccattagatatttatgtatcttctaaagagaaactctcaacctg |
41295730 |
T |
|
| Q |
411 |
gcatttatgttttggtctaagcatatctaactgaaaaccctgtaatttccttttcttgttccattcaataatgttgatgtcgtgcatttcatcaacatgg |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||| ||||| |
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|
| T |
41295731 |
atatttatgttttggtctaagcatatctaactgaaaaccctgtaattttcttttcttgctccattcaataatgttgatgtcatgcatttcatccacatga |
41295830 |
T |
|
| Q |
511 |
aatctggaaacagttttcgaataatgtcagttgaaaggaagaaaaaagataaatcatgacaataatataacaaataatggaatgaa |
596 |
Q |
| |
|
||| ||||||||||||||||| | | | |||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41295831 |
aatttggaaacagttttcgaaaattattagttgaaaagaagaaaaaaga-aaatcatgacaataatatgacaaataatggaatgaa |
41295915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 163; Significance: 9e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 327 - 597
Target Start/End: Original strand, 13362782 - 13363051
Alignment:
| Q |
327 |
attaaccgtgtggttgttcgcacttccaaaaattggactttcatcagacattgatgtatcttctgaagagaaactctcaacccggcatttatgttttggt |
426 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||| ||||| | ||||||||||||||| |||||||||||||||| || |||||| ||||||| |
|
|
| T |
13362782 |
attaaccgtgtggttgttcacacttcaaaaaattggacttccatcaaatattgatgtatcttctaaagagaaactctcaactcgatatttatattttggt |
13362881 |
T |
|
| Q |
427 |
ctaagcatatctaactgaaaaccctgtaatttccttttcttgttccattcaataatgttgatgtcgtgcatttcatcaacatggaatctggaaacagttt |
526 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||| |||||||||| ||||| ||| |||||||||||| |
|
|
| T |
13362882 |
ctaagcatatctaactgaaaaccctgtaattttcttttgttgctccattcaataatgttgatgtcatgcatttcattcacatgaaatttggaaacagttt |
13362981 |
T |
|
| Q |
527 |
tcgaataatgtcagttgaaaggaagaaaaaagataaatcatgacaataatataacaaataatggaatgaac |
597 |
Q |
| |
|
| ||| | ||| |||||||| |||||||||||| |||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
13362982 |
ttgaaaattgttagttgaaaagaagaaaaaaga-aaatcaagacaatagtataacaaataatggaatgaac |
13363051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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