View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3863_low_64 (Length: 235)
Name: NF3863_low_64
Description: NF3863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3863_low_64 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 26 - 220
Target Start/End: Original strand, 3678208 - 3678403
Alignment:
| Q |
26 |
acccaaagtaataactttt-ttcttgatcatcctgctagtattaagtattaactcccaataacacatatatagaagcatgagcaagcacctcatcagaaa |
124 |
Q |
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| T |
3678208 |
acccaaagtaacaactttttttcttgatcatcctgctagtatcaagtattaactcccaataacacatatatagaagcatgagcaagcacctcatcagaaa |
3678307 |
T |
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| Q |
125 |
aatgcttatctaaaatcttcattcccatcccatgcttatcctagcatcggcaaggaagttggctcactcaacacgttttcttatggtagctctttt |
220 |
Q |
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| T |
3678308 |
aatgcatatctaaaatcttcattcccatcccatgcttatcctagcatcggcaaggaagttggctcactcaacacgttttcttatggtagctctttt |
3678403 |
T |
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